RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 HAUS8Q9BT25 410 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 VTA1Q9NP79 307 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 MRGBPQ9NV56 204 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 MARCOQ9UEW3 520 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 SUN2Q9UH99 717 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 USP20Q9Y2K6 914 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 PCDHA2Q9Y5H9 948 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 CDY2AQ9Y6F7 541 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 CDY1Q9Y6F8 540 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 ATRNL1Q5VV63 1379 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 LACTBL1A8MY62 500 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 SNX2O60749 519 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 SHBGP04278 402 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 CASP2P42575 452 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 LAMB3Q13751 1172 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 RRP1BQ14684 758 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 USP10Q14694 798 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 GLRA4Q5JXX5 417 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 PLEKHH3Q7Z736 793 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 IQCKQ8N0W5 287 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 SLC26A7Q8TE54 656 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 SH3TC2Q8TF17 1288 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 PTPRN2Q92932 1015 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 OPTNQ96CV9 577 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 CMTM5Q96DZ9 223 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 BAG5Q9UL15 447 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 CRYBG1Q9Y4K1 1723 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 MYH6P13533 1939 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 FBXO21O94952 628 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 AMHR2Q16671 573 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 ASTE1Q2TB18 679 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 ERMARDQ5T6L9 678 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 KRT80Q6KB66 452 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 ZNF410Q86VK4 478 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 DDX27Q96GQ7 796 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 GPATCH2LQ9NWQ4 482 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 UBR2Q8IWV8 1755 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 APOC4-APOC2K7ER74 178 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 APOC2P02655 101 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 ABHD2P08910 425 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 KIZQ2M2Z5 673 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 NBPF20Q3BBV1 942 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 MDH1BQ5I0G3 518 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 CELF3Q5SZQ8 465 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 OSBPL1AQ9BXW6 950 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 ASCC2Q9H1I8 757 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 ACTL7BQ9Y614 415 aa11.18□□□□□ -0.62
LIMCH1-205ENST00000503057 SIGLEC16A6NMB1 481 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 H2AFYO75367 372 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 APOA4P06727 396 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 C6orf222P0C671 652 aaPredicted RBP11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 NOMO3P69849 1222 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 ZNF235Q14590 738 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 TMEM132BQ14DG7 1078 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 FRA10AC1Q70Z53 315 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 PRPF39Q86UA1 669 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 TASP1Q9H6P5 420 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 H3BRB1 525 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 GSTA4O15217 222 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 LIASO43766 372 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 UBOX5O94941 541 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 ODC1P11926 461 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 CYP2F1P24903 491 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 ELF1P32519 619 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 ENPEPQ07075 957 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 GRIK4Q16099 956 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 MTMR14Q8NCE2 650 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 OR6P1Q8NGX9 317 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 CALML6Q8TD86 181 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 TSC22D3Q99576 134 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 TUT1Q9H6E5 874 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 FNDC3AQ9Y2H6 1198 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 B2RBV5 119 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 DNAJC8O75937 253 aaPredicted RBP11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 ZNF286BP0CG31 522 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 ESRRGP62508 458 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 MAPRE1Q15691 268 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 ZNF669Q96BR6 464 aaPredicted RBP11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 SPDL1Q96EA4 605 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 KREMEN1Q96MU8 473 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 FAM167BQ9BTA0 163 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 KIF9Q9HAQ2 790 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 KLK14Q9P0G3 267 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 YDJCA8MPS7 323 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 F8VP50 259 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 F9P00740 461 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 CTSHP09668 335 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 AUHQ13825 339 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 CAPSQ13938 189 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 FBXO47Q5MNV8 452 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 MYLK4Q86YV6 388 aaPredicted RBP11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 ALLCQ8N6M5 410 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 ICA1LQ8NDH6 482 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 CATSPER1Q8NEC5 780 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 ALG3Q92685 438 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 ACO2Q99798 780 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 IKZF4Q9H2S9 585 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 SUDS3Q9H7L9 328 aaPredicted RBP11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 CD248Q9HCU0 757 aa11.17□□□□□ -0.62
LIMCH1-205ENST00000503057 ARHGEF38Q9NXL2 777 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms