RNA–Protein interactions for RNA: ENST00000502948.1

LSM3P4-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 4, humanhuman

BASIC

Gene LSM3P4, Length 309 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P4-201ENST00000502948 SPTBN2O15020 2390 aa6.51□□□□□ -1.37
LSM3P4-201ENST00000502948 MAP1BP46821 2468 aaKnown RBP6.51□□□□□ -1.37
LSM3P4-201ENST00000502948 PTPRJQ12913 1337 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 ZFHX4Q86UP3 3567 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 A0A087X0B3 334 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 PVALEFA0A1B0GWK0 134 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 VPS37CA5D8V6 355 aaPredicted RBP6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 FAM221BA6H8Z2 402 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 HOXC11O43248 304 aaPredicted RBP6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 TGFB1I1O43294 461 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 KRT37O76014 449 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 PRPF6O94906 941 aaKnown RBP6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 YEATS4O95619 227 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 ADH1CP00326 375 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 CYP17A1P05093 508 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 PROS1P07225 676 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 C7P10643 843 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 IDEP14735 1019 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 PTPN1P18031 435 aaKnown RBP6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 BDNFP23560 247 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 P2RY2P41231 377 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 KIR2DL1P43626 348 aaPredicted RBP6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 PXNP49023 591 aaPredicted RBP6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 ZNF132P52740 706 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 MCCD1P59942 119 aaPredicted RBP6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 USP46P62068 366 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 GAD2Q05329 585 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 ENPEPQ07075 957 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 HNRNPDQ14103 355 aaKnown RBP6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 DHCR24Q15392 516 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 SDHAF4Q5VUM1 108 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 TDRD10Q5VZ19 366 aaKnown RBP6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 ATL3Q6DD88 541 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 KLHDC10Q6PID8 442 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 RHBDF2Q6PJF5 856 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 UNC13DQ70J99 1090 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 HS2ST1Q7LGA3 356 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 CBWD2Q8IUF1 395 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 SYT12Q8IV01 421 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 SLC9A9Q8IVB4 645 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 SCN4BQ8IWT1 228 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 ETFBKMTQ8IXQ9 262 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 PHTF2Q8N3S3 785 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 IQUBQ8NA54 791 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 IL17RCQ8NAC3 791 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 XXYLT1Q8NBI6 393 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 LINC00301Q8NCQ3 95 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 STKLD1Q8NE28 680 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 MDGA1Q8NFP4 955 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 GOLGA5Q8TBA6 731 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 WHAMMQ8TF30 809 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 TAF4BQ92750 862 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 SYAP1Q96A49 352 aaPredicted RBP6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 FAXDC2Q96IV6 333 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 TNIP3Q96KP6 325 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 CLIC6Q96NY7 704 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 HHIPQ96QV1 700 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 USP28Q96RU2 1077 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 FNBP1Q96RU3 617 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 CGRRF1Q99675 332 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 EDEM2Q9BV94 578 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 FGFBP2Q9BYJ0 223 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 RNF38Q9H0F5 515 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 XYLT2Q9H1B5 865 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 IKZF4Q9H2S9 585 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 LINC00597Q9H2U6 94 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 FAM124BQ9H5Z6 455 aaPredicted RBP6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 CSNK1G1Q9HCP0 422 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 TRPC7Q9HCX4 862 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 TMEM9BQ9NQ34 198 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 AGPAT3Q9NRZ7 376 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 PCNX2A6NKB5 2137 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 ATP8B3O60423 1300 aa6.5□□□□□ -1.37
LSM3P4-201ENST00000502948 MYH10P35580 1976 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 PCDH15Q96QU1 1955 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 SDK1Q7Z5N4 2213 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 GOLGA8IPA6NC78 632 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 GOLGA8JA6NMD2 632 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 F8VP50 259 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 H0Y626 953 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 CDX4O14627 284 aaPredicted RBP6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 IKBKBO14920 756 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 MAPK13O15264 365 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 STX6O43752 255 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 CUTAO60888 179 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 ATP2C2O75185 946 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 KAT7O95251 611 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 TRIM16O95361 564 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 CST3P01034 146 aaPredicted RBP6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 RPN1P04843 607 aaKnown RBP6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 APODP05090 189 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 MYL1P05976 194 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 TNNI1P19237 187 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 YWHAQP27348 245 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 HOXC13P31276 330 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 CYP27A1Q02318 531 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 CREB5Q02930 508 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 CYP24A1Q07973 514 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 TAF10Q12962 218 aa6.49□□□□□ -1.37
LSM3P4-201ENST00000502948 E2F5Q15329 346 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms