RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 HADHQ16836 314 aaKnown RBP16.83■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 LY6KQ17RY6 165 aa16.83■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 EEF1DP3Q658K8 133 aa16.83■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 LBX2Q6XYB7 198 aa16.83■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TSHZ1Q6ZSZ6 1077 aa16.83■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 C3orf62Q6ZUJ4 267 aa16.83■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 FASTKD5Q7L8L6 764 aaKnown RBP16.83■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TAB3Q8N5C8 712 aaPredicted RBP16.83■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 CMASQ8NFW8 434 aaPredicted RBP16.83■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 NSMCE1Q8WV22 266 aa16.83■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 LRRC37BQ96QE4 947 aa16.83■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 PAFAH2Q99487 392 aa16.83■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 BCO2Q9BYV7 579 aa16.83■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 METTL5Q9NRN9 209 aaKnown RBP16.83■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 RBPJLQ9UBG7 517 aa16.83■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 SIX4Q9UIU6 781 aa16.83■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 B4GALT5O43286 388 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ZWINTO95229 277 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 RPSAP08865 295 aaKnown RBP16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ADRA1DP25100 572 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TARSP26639 723 aaKnown RBP16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 PHBP35232 272 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ORC1Q13415 861 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 PARP6Q2NL67 630 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 SMYD5Q6GMV2 418 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 MPZL3Q6UWV2 235 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 METTL7BQ6UX53 244 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 CDR2LQ86X02 465 aaPredicted RBP16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 VSIG1Q86XK7 387 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TRIM50Q86XT4 487 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ZBTB8OSQ8IWT0 167 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TMEM192Q8IY95 271 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 RSAD2Q8WXG1 361 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TWNKQ96RR1 684 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 HAO1Q9UJM8 370 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 CNMDO75829 334 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ATP5HO75947 161 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ARIH2O95376 493 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TNNC2P02585 160 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 NRLP54845 237 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 MTM1Q13496 603 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 MXD4Q14582 209 aaPredicted RBP16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TAF1CQ15572 869 aaPredicted RBP16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 SLC7A6OSQ96CW6 309 aaPredicted RBP16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ZNF668Q96K58 619 aaPredicted RBP16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TMEM237Q96Q45 408 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TRIM6Q9C030 488 aaPredicted RBP16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 C12orf65Q9H3J6 166 aaKnown RBP16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 FZD8Q9H461 694 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 NOP53Q9NZM5 478 aaKnown RBP16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 PCSK1NQ9UHG2 260 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 PPME1Q9Y570 386 aa16.82■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 MED7O43513 233 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 DCTN3O75935 186 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 WFS1O76024 890 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 GJB1P08034 283 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 MIPP30301 263 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 KLHL38Q2WGJ6 581 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 PLEKHG4Q58EX7 1191 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ATF7IP2Q5U623 682 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 NAIF1Q69YI7 327 aaPredicted RBP16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 EEPD1Q7L9B9 569 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 IFNL1Q8IU54 200 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 RIOX2Q8IUF8 465 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 IGDCC3Q8IVU1 814 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 BANPQ8N9N5 519 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 FAM71DQ8N9W8 422 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 SLC4A11Q8NBS3 891 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ANKRD36BP1Q96IX9 119 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 FAM167AQ96KS9 214 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 RAB3IPQ96QF0 476 aaPredicted RBP16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 KANSL3Q9P2N6 904 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 HMGXB4Q9UGU5 601 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 XPO7Q9UIA9 1087 aaKnown RBP16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 NUMBLQ9Y6R0 609 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 APOC4-APOC2K7ER74 178 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ACKR2O00590 384 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TRUB2O95900 331 aaKnown RBP16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 APOC2P02655 101 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 EIF3EP60228 445 aaKnown RBP16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 CRHR2Q13324 411 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 DPYSL3Q14195 570 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 BBS9Q3SYG4 887 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 NCAPG2Q86XI2 1143 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 RFX6Q8HWS3 928 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 KCTD6Q8NC69 237 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TCP10LQ8TDR4 215 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 MCRS1Q96EZ8 462 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 GPR20Q99678 358 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ELOVL4Q9GZR5 314 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 C2orf40Q9H1Z8 148 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 WDR35Q9P2L0 1181 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 SLC17A7Q9P2U7 560 aa16.81■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 LGR5O75473 907 aa16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 CXCL8P10145 99 aa16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 TGFB3P10600 412 aa16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 ALDH3A1P30838 453 aa16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 GRIK3Q13003 919 aa16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 HSDL1Q3SXM5 330 aa16.8■□□□□ 0.28
MSH5-SAPCD1-208ENST00000498473 AGGF1Q8N302 714 aaeCLIP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms