RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 PIK3CAP42336 1068 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 GCLMP48507 274 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 FNTBP49356 437 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 NDST1P52848 882 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 SLC7A9P82251 487 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 IFRD2Q12894 506 aaPredicted RBP13.53□□□□□ -0.24
PTPRF-214ENST00000496043 USP4Q13107 963 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 EML3Q32P44 896 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 FBXO43Q4G163 708 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 FSTL4Q6MZW2 842 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 FAM35AQ86V20 835 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 KIAA1958Q8N8K9 716 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 CCDC150Q8NCX0 1101 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 PDZD8Q8NEN9 1154 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 OVCA2Q8WZ82 227 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 FBXO32Q969P5 355 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 IMPG2Q9BZV3 1241 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 CYP3A43Q9HB55 503 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 FBRSL1Q9HCM7 1045 aaKnown RBP13.53□□□□□ -0.24
PTPRF-214ENST00000496043 TMEM30AQ9NV96 361 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 RMND1Q9NWS8 449 aa13.53□□□□□ -0.24
PTPRF-214ENST00000496043 SMG5Q9UPR3 1016 aaKnown RBP13.53□□□□□ -0.24
PTPRF-214ENST00000496043 SLC9A3R1O14745 358 aaPredicted RBP13.52□□□□□ -0.25
PTPRF-214ENST00000496043 HRO43593 1189 aa13.52□□□□□ -0.25
PTPRF-214ENST00000496043 AP1G2O75843 785 aa13.52□□□□□ -0.25
PTPRF-214ENST00000496043 NFATC1O95644 943 aa13.52□□□□□ -0.25
PTPRF-214ENST00000496043 EGFP01133 1207 aa13.52□□□□□ -0.25
PTPRF-214ENST00000496043 GTF2H1P32780 548 aa13.52□□□□□ -0.25
PTPRF-214ENST00000496043 EDRF1Q3B7T1 1238 aa13.52□□□□□ -0.25
PTPRF-214ENST00000496043 HEATR6Q6AI08 1181 aaKnown RBP13.52□□□□□ -0.25
PTPRF-214ENST00000496043 SPOPLQ6IQ16 392 aa13.52□□□□□ -0.25
PTPRF-214ENST00000496043 DDX42Q86XP3 938 aaKnown RBP eCLIP13.52□□□□□ -0.25
PTPRF-214ENST00000496043 ADGRG2Q8IZP9 1017 aa13.52□□□□□ -0.25
PTPRF-214ENST00000496043 FMR1NBQ8N0W7 255 aaPredicted RBP13.52□□□□□ -0.25
PTPRF-214ENST00000496043 CD101Q93033 1021 aa13.52□□□□□ -0.25
PTPRF-214ENST00000496043 CHFRQ96EP1 664 aa13.52□□□□□ -0.25
PTPRF-214ENST00000496043 SMARCD1Q96GM5 515 aa13.52□□□□□ -0.25
PTPRF-214ENST00000496043 DNAI2Q9GZS0 605 aa13.52□□□□□ -0.25
PTPRF-214ENST00000496043 DMAP1Q9NPF5 467 aaPredicted RBP13.52□□□□□ -0.25
PTPRF-214ENST00000496043 IL37Q9NZH6 218 aa13.52□□□□□ -0.25
PTPRF-214ENST00000496043 GMEB2Q9UKD1 530 aa13.52□□□□□ -0.25
PTPRF-214ENST00000496043 SLC8A2Q9UPR5 921 aa13.52□□□□□ -0.25
PTPRF-214ENST00000496043 CPQQ9Y646 472 aa13.52□□□□□ -0.25
PTPRF-214ENST00000496043 EP300Q09472 2414 aaPredicted RBP13.52□□□□□ -0.25
PTPRF-214ENST00000496043 TNFRSF10BO14763 440 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 CETN3O15182 167 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 STX10O60499 249 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 SMC2O95347 1197 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 OLFM2O95897 454 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 OAS1P00973 400 aaKnown RBP13.51□□□□□ -0.25
PTPRF-214ENST00000496043 TRIM49P0CI25 452 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 TRIM49CP0CI26 452 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 MBL2P11226 248 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-214ENST00000496043 MCCD1P59942 119 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-214ENST00000496043 ZXDBP98169 803 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 PPP3CAQ08209 521 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 DMWDQ09019 674 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 PNOCQ13519 176 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 SIM2Q14190 667 aaPredicted RBP13.51□□□□□ -0.25
PTPRF-214ENST00000496043 HECTD3Q5T447 861 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 SNX30Q5VWJ9 437 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 PRR23BQ6ZRT6 265 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 WDR5BQ86VZ2 330 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 FUKQ8N0W3 1084 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 CCDC26Q8TAB7 109 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 SCAMP5Q8TAC9 235 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 TAS1R2Q8TE23 839 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 GSDMAQ96QA5 445 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 NT5C1AQ9BXI3 368 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 GTPBP4Q9BZE4 634 aaKnown RBP13.51□□□□□ -0.25
PTPRF-214ENST00000496043 MMRN2Q9H8L6 949 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 TMEM8AQ9HCN3 771 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.51□□□□□ -0.25
PTPRF-214ENST00000496043 C2orf42Q9NWW7 574 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 HOOK1Q9UJC3 728 aaKnown RBP13.51□□□□□ -0.25
PTPRF-214ENST00000496043 FANCMQ8IYD8 2048 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 DENND4CQ5VZ89 1909 aa13.51□□□□□ -0.25
PTPRF-214ENST00000496043 PATJQ8NI35 1801 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 MYO15AQ9UKN7 3530 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 RNF40O75150 1001 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 CCDC130P13994 396 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 ASPAP45381 313 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 SLC5A3P53794 718 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 MAP3K7CLP57077 242 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 FOXK2Q01167 660 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 ORC1Q13415 861 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 ZCWPW2Q504Y3 356 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 KRT39Q6A163 491 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 LAIR1Q6GTX8 287 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 FILIP1Q7Z7B0 1213 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 CAMKK1Q8N5S9 505 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 C12orf29Q8N999 325 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 ENGASEQ8NFI3 743 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 SLC2A14Q8TDB8 520 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 CYFIP2Q96F07 1278 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 HNRNPABQ99729 332 aaKnown RBP13.5□□□□□ -0.25
PTPRF-214ENST00000496043 TSG101Q99816 390 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 SMOQ99835 787 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 FBXO44Q9H4M3 255 aa13.5□□□□□ -0.25
PTPRF-214ENST00000496043 APOBEC3GQ9HC16 384 aaKnown RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms