RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	TSPEAR	Q8WU66	669 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	AFG1L	Q8WV93	481 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	MVB12A	Q96EY5	273 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	SGCZ	Q96LD1	299 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	PHF7	Q9BWX1	381 aa	Predicted RBP	4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	ANO3	Q9BYT9	981 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	4.85	□□□□□ -1.63	1e-10	■■□□□ 13.9
VPS52-222	ENST00000495981	LUZP4	Q9P127	313 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	USP36	Q9P275	1121 aa	Known RBP	4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	CTNNA3	Q9UI47	895 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	DMTF1	Q9Y222	760 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	POLH	Q9Y253	713 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	RWDD3	Q9Y3V2	267 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	INSL6	Q9Y581	213 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	PCDHGB6	Q9Y5F9	930 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	ATP23	Q9Y6H3	246 aa		4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	USP9X	Q93008	2570 aa	Predicted RBP	4.85	□□□□□ -1.63
VPS52-222	ENST00000495981	MYH7B	A7E2Y1	1941 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	LOXHD1	Q8IVV2	1947 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	PLXNA4	Q9HCM2	1894 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	ABCB11	O95342	1321 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	SSU72P8	A0A1W2PR75	194 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	PRSS38	A1L453	326 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	B3GALT2	O43825	422 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	BUB1B	O60566	1050 aa	Predicted RBP	4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	FUCA1	P04066	466 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	ALDH2	P05091	517 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	CEACAM5	P06731	702 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	SUPT20HL2	P0C7V6	817 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	GOLGA8H	P0CJ92	632 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	PC	P11498	1178 aa	Known RBP	4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	CKB	P12277	381 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	ENDOU	P21128	410 aa	Known RBP	4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	UBA1	P22314	1058 aa	Known RBP	4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	HAL	P42357	657 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	HSD17B4	P51659	736 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	CLCN7	P51798	805 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	ZNF200	P98182	395 aa	Predicted RBP	4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	ALDH6A1	Q02252	535 aa	Known RBP	4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	POU5F1B	Q06416	359 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	EGR3	Q06889	387 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	PLA2G4E	Q3MJ16	856 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	USH1G	Q495M9	461 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	EMC4	Q5J8M3	183 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	GPATCH4	Q5T3I0	446 aa	Known RBP	4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	SWSAP1	Q6NVH7	229 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	CNKSR3	Q6P9H4	555 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	RBM23	Q86U06	439 aa	Known RBP	4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	RTN4RL1	Q86UN2	441 aa	Predicted RBP	4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	CREG2	Q8IUH2	290 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	SLC41A1	Q8IVJ1	513 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	CCDC105	Q8IYK2	499 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	FAM186B	Q8IYM0	893 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	MYOCD	Q8IZQ8	938 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	MIER2	Q8N344	545 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	PPTC7	Q8NI37	304 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	RIN2	Q8WYP3	895 aa	Predicted RBP	4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	NACC1	Q96RE7	527 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	MAP3K14	Q99558	947 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	APOL5	Q9BWW9	433 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	S1PR5	Q9H228	398 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	POFUT1	Q9H488	388 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	ATP13A1	Q9HD20	1204 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	PXMP2	Q9NR77	195 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	HELLS	Q9NRZ9	838 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	L1RE1	Q9UN81	338 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	IPP	Q9Y573	584 aa		4.84	□□□□□ -1.63
VPS52-222	ENST00000495981	PTPN13	Q12923	2485 aa		4.84	□□□□□ -1.64
VPS52-222	ENST00000495981	HECTD1	Q9ULT8	2610 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	ASXL3	Q9C0F0	2248 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	FAM227A	F5H4B4	570 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	SLC27A2	O14975	620 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	PER2	O15055	1255 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	NCK2	O43639	380 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	TADA3	O75528	432 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	DGKI	O75912	1065 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	UBXN7	O94888	489 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	GH1	P01241	217 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	LPL	P06858	475 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	MSL3P1	P0C860	447 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	SETSIP	P0DME0	302 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	TXN	P10599	105 aa	Known RBP	4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	PTPN1	P18031	435 aa	Known RBP	4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	RPL10	P27635	214 aa	Known RBP	4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	THBS2	P35442	1172 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	NDUFV1	P49821	464 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	GSK3A	P49840	483 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	CLCN5	P51795	746 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	MRPS9	P82933	396 aa	Known RBP	4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	STK3	Q13188	491 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	TUSC3	Q13454	348 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	BFSP2	Q13515	415 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	TRIM25	Q14258	630 aa	Known RBP	4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	PTGIS	Q16647	500 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	UGT8	Q16880	541 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	LY6K	Q17RY6	165 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	MUM1	Q2TAK8	710 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	QRICH1	Q2TAL8	776 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	MCMDC2	Q4G0Z9	681 aa		4.83	□□□□□ -1.64
VPS52-222	ENST00000495981	ASPRV1	Q53RT3	343 aa		4.83	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms