RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 SLC25A27O95847 323 aa17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 ARF4P18085 180 aaPredicted RBP17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 CDH5P33151 784 aaPredicted RBP17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 SLC10A6Q3KNW5 377 aa17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 PLEKHG4Q58EX7 1191 aa17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 FAM102AQ5T9C2 384 aaPredicted RBP17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 RNASEH2BQ5TBB1 312 aaKnown RBP17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 APBB1IPQ7Z5R6 666 aaPredicted RBP17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 LRRC6Q86X45 466 aa17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 RFX6Q8HWS3 928 aa17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 UNC45BQ8IWX7 931 aa17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 FAM13CQ8NE31 585 aa17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 AFG1LQ8WV93 481 aa17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 MAML1Q92585 1016 aa17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 PDZD7Q9H5P4 517 aa17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 ARMCX1Q9P291 453 aa17.29■□□□□ 0.36
CCDC88B-210ENST00000494566 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 EME2A4GXA9 379 aaPredicted RBP17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 LGALS2P05162 132 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 MIPP30301 263 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 GJA5P36382 358 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 ADCYAP1R1P41586 468 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 CTCFP49711 727 aaPredicted RBP17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 TTLL4Q14679 1199 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 FNBP1LQ5T0N5 605 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 ASRGL1Q7L266 308 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 OTOAQ7RTW8 1153 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 ZC3H18Q86VM9 953 aaKnown RBP17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 KCTD6Q8NC69 237 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 BBOF1Q8ND07 529 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 NLRP7Q8WX94 980 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 ZNF518BQ9C0D4 1074 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 TNFSF13BQ9Y275 285 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 SPDYE5A6NIY4 337 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 SIGLEC16A6NMB1 481 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 MAP3K13O43283 966 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 CYP3A5P20815 502 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 CCND1P24385 295 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 KDELR1P24390 212 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 TUBP50607 506 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 SURF1Q15526 300 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 AMHR2Q16671 573 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 TRNP1Q6NT89 227 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 FAM71DQ8N9W8 422 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 TTC17Q96AE7 1141 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 PEBP4Q96S96 227 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 SLC5A4Q9NY91 659 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 ERAP1Q9NZ08 941 aa17.28■□□□□ 0.36
CCDC88B-210ENST00000494566 CCDC195A0A1B0GUA6 201 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 ASMTLO95671 621 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 ARHGAP1Q07960 439 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 FAXCQ5TGI0 409 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 PTPRN2Q92932 1015 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 HPDLQ96IR7 371 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 BCO2Q9BYV7 579 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 ZNF408Q9H9D4 720 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 GPATCH2LQ9NWQ4 482 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 HCRTO43612 131 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 AVILO75366 819 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 FAM155BO75949 473 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 KITP10721 976 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 NDST1P52848 882 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 IRX4P78413 519 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 LMNB2Q03252 620 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 SPARCL1Q14515 664 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 STAT4Q14765 748 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 LRRC38Q5VT99 294 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 TTC7BQ86TV6 843 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 SLC35B2Q8TB61 432 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 TMEM176AQ96HP8 235 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 MPHOSPH6Q99547 160 aaKnown RBP17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 TRIM56Q9BRZ2 755 aaKnown RBP17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 ZNF395Q9H8N7 513 aaPredicted RBP17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 MARCOQ9UEW3 520 aaPredicted RBP17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 CHMP2BQ9UQN3 213 aa17.27■□□□□ 0.36
CCDC88B-210ENST00000494566 PPEF2O14830 753 aa17.27■□□□□ 0.35
CCDC88B-210ENST00000494566 GAS2O43903 313 aaKnown RBP17.27■□□□□ 0.35
CCDC88B-210ENST00000494566 CILPO75339 1184 aa17.27■□□□□ 0.35
CCDC88B-210ENST00000494566 T-ENOLP0DO92 83 aa17.27■□□□□ 0.35
CCDC88B-210ENST00000494566 PSEN1P49768 467 aa17.27■□□□□ 0.35
CCDC88B-210ENST00000494566 BASP1P80723 227 aaKnown RBP17.27■□□□□ 0.35
CCDC88B-210ENST00000494566 PPP1R21Q6ZMI0 780 aa17.27■□□□□ 0.35
CCDC88B-210ENST00000494566 ILDR2Q71H61 639 aa17.27■□□□□ 0.35
CCDC88B-210ENST00000494566 CXorf38Q8TB03 319 aa17.27■□□□□ 0.35
CCDC88B-210ENST00000494566 MAGEC3Q8TD91 643 aa17.27■□□□□ 0.35
CCDC88B-210ENST00000494566 DDX56Q9NY93 547 aaKnown RBP17.27■□□□□ 0.35
CCDC88B-210ENST00000494566 EURLQ9NYK6 297 aa17.27■□□□□ 0.35
CCDC88B-210ENST00000494566 ZFP69BQ9UJL9 534 aa17.27■□□□□ 0.35
CCDC88B-210ENST00000494566 STRIP2Q9ULQ0 834 aa17.27■□□□□ 0.35
CCDC88B-210ENST00000494566 GPX6P59796 221 aa17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 ZBTB16Q05516 673 aa17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 CRYMQ14894 314 aa17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 NIPA2Q8N8Q9 360 aa17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 RSAD2Q8WXG1 361 aa17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 CPT1BQ92523 772 aa17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 CFAP57Q96MR6 1250 aa17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 ADPGKQ9BRR6 497 aa17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 WDR83Q9BRX9 315 aaKnown RBP17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 OSBPL1AQ9BXW6 950 aa17.26■□□□□ 0.35
CCDC88B-210ENST00000494566 FAM49BQ9NUQ9 324 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms