RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 BTBD10Q9BSF8 475 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 ZCWPW1Q9H0M4 648 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 SETD4Q9NVD3 440 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 CPA4Q9UI42 421 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 XPO1O14980 1071 aaKnown RBP16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 FAM200BP0CF97 657 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 STX1BP61266 288 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 PRAMEP78395 509 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 CENPCQ03188 943 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 RASA2Q15283 850 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 ABRAQ8N0Z2 381 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 E2F7Q96AV8 911 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 OSMRQ99650 979 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 RGPD1P0DJD0 1748 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 PROSCO94903 275 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 CD4P01730 458 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 ZFXP17010 805 aaPredicted RBP16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 PMLP29590 882 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 TPI1P60174 286 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 RRP1BQ14684 758 aaKnown RBP16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 ZNF484Q5JVG2 852 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 CATSPERGQ6ZRH7 1159 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 COPS5Q92905 334 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 ZNF184Q99676 751 aaPredicted RBP16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 DDX50Q9BQ39 737 aaKnown RBP16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 TMEM120AQ9BXJ8 343 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 RSAD1Q9HA92 442 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 PCMTD2Q9NV79 361 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 ZC3H7BQ9UGR2 993 aaKnown RBP16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 RIPK3Q9Y572 518 aa16.94■□□□□ 0.3
CCDC88B-209ENST00000494080 PFDN6O15212 129 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 MCOLN2Q8IZK6 566 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 TMEM161BQ8NDZ6 487 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 GPRC5DQ9NZD1 345 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 NDUFA13Q9P0J0 144 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 RRN3P2A6NIE6 340 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 TPP2P29144 1249 aaPredicted RBP16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 CHI3L2Q15782 390 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 WLSQ5T9L3 541 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 DUPD1Q68J44 220 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 WDR49Q8IV35 697 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 EPS8L1Q8TE68 723 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 GTF3C2Q8WUA4 911 aaPredicted RBP16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 INPP5DQ92835 1189 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 SDCCAG3Q96C92 435 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 PPP1R36Q96LQ0 422 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 KCNK16Q96T55 309 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 NINJ2Q9NZG7 142 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 LGR5O75473 907 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 TYK2P29597 1187 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 PCYT1AP49585 367 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 BLMHQ13867 455 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 HYIQ5T013 277 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 TTC8Q8TAM2 541 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 PPP1R13LQ8WUF5 828 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 PDCD6IPQ8WUM4 868 aaKnown RBP16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 EME1Q96AY2 570 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 NRBF2Q96F24 287 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 CCT7Q99832 543 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 DTNAQ9Y4J8 743 aa16.93■□□□□ 0.3
CCDC88B-209ENST00000494080 DPPA5A6NC42 116 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 AIM2O14862 343 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 CPB1P15086 417 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 GTF2A2P52657 109 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 SPON2Q9BUD6 331 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 GPATCH2LQ9NWQ4 482 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 ARMCX1Q9P291 453 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 DFFAO00273 331 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 PDE5AO76074 875 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 PRKCIP41743 596 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 GCNT1Q02742 428 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 CDCA5Q96FF9 252 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 KATNAL1Q9BW62 490 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 RNF19AQ9NV58 838 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 DDX18Q9NVP1 670 aaKnown RBP16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 IGKV6D-41A0A0C4DH26 115 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 CXCL11O14625 94 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 SEC24DO94855 1032 aaPredicted RBP16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 CLPTM1O96005 669 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 GTF2BQ00403 316 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 IYDQ6PHW0 289 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 ACAD11Q709F0 780 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 ASAP3Q8TDY4 903 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 USP33Q8TEY7 942 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 SHISA4Q96DD7 197 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 CNBD2Q96M20 576 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 TMEM121Q9BTD3 319 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 SLCO1B3Q9NPD5 702 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 POLIQ9UNA4 740 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 ENO3P13929 434 aaPredicted RBP16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 GRIK1P39086 918 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 PKN2Q16513 984 aaKnown RBP16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 PLEKHH3Q7Z736 793 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 CATSPER1Q8NEC5 780 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 REPS2Q8NFH8 660 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 MPP4Q96JB8 637 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 TTYH3Q9C0H2 523 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 IL1RAPL1Q9NZN1 696 aa16.92■□□□□ 0.3
CCDC88B-209ENST00000494080 ASTN2O75129 1339 aaPredicted RBP16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms