RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 B3GNT5Q9BYG0 378 aa11.36□□□□□ -0.59
COL6A3-214ENST00000493608 OSBPL6Q9BZF3 934 aa11.36□□□□□ -0.59
COL6A3-214ENST00000493608 LMAN1LQ9HAT1 526 aa11.36□□□□□ -0.59
COL6A3-214ENST00000493608 GKN1Q9NS71 199 aa11.36□□□□□ -0.59
COL6A3-214ENST00000493608 MRPS17Q9Y2R5 130 aaKnown RBP11.36□□□□□ -0.59
COL6A3-214ENST00000493608 PATJQ8NI35 1801 aa11.36□□□□□ -0.59
COL6A3-214ENST00000493608 PTPRZ1P23471 2315 aaPredicted RBP11.36□□□□□ -0.59
COL6A3-214ENST00000493608 C2orf78A6NCI8 922 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 F8VP50 259 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 MAN2B1O00754 1011 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 NCAM2O15394 837 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 FAM163BP0C2L3 166 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 SP9P0CG40 484 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 ANXA13P27216 316 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 WEE1P30291 646 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 NBL1P41271 181 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 PRCPP42785 496 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 MAGEA11P43364 429 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 AP3M2P53677 418 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 CSTF1Q05048 431 aaKnown RBP11.35□□□□□ -0.59
COL6A3-214ENST00000493608 PPP3CAQ08209 521 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 SGSM1Q2NKQ1 1148 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 ARHGAP29Q52LW3 1261 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 TXNDC11Q6PKC3 985 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 TSSK4Q6SA08 328 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 VSTM1Q6UX27 236 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 ACOT1Q86TX2 421 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 MON1AQ86VX9 555 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 FAM186BQ8IYM0 893 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 ARL14EPQ8N8R7 260 aaPredicted RBP11.35□□□□□ -0.59
COL6A3-214ENST00000493608 B3GALNT2Q8NCR0 500 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 TMEM174Q8WUU8 243 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 CLDN23Q96B33 292 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 TRMT2BQ96GJ1 504 aaKnown RBP11.35□□□□□ -0.59
COL6A3-214ENST00000493608 MYRFLQ96LU7 910 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 MED10Q9BTT4 135 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 ZNF518BQ9C0D4 1074 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 VRTNQ9H8Y1 702 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 TRPV5Q9NQA5 729 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 RBM12Q9NTZ6 932 aaKnown RBP11.35□□□□□ -0.59
COL6A3-214ENST00000493608 TDP1Q9NUW8 608 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 OBP2AQ9NY56 170 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 UXTQ9UBK9 157 aaPredicted RBP11.35□□□□□ -0.59
COL6A3-214ENST00000493608 PCDHA5Q9Y5H7 936 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 VPS13AQ96RL7 3174 aa11.35□□□□□ -0.59
COL6A3-214ENST00000493608 RIF1Q5UIP0 2472 aaKnown RBP11.34□□□□□ -0.59
COL6A3-214ENST00000493608 MYOFQ9NZM1 2061 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 PROB1E7EW31 1015 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 SPECC1L-ADORA2AF8WAN1 911 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 IKBKBO14920 756 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 LAMTOR5O43504 91 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 GADD45BO75293 160 aaPredicted RBP11.34□□□□□ -0.59
COL6A3-214ENST00000493608 ABL1P00519 1130 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 AVPP01185 164 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 KRT13P13646 458 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 JUNDP17535 347 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 DDX6P26196 483 aaKnown RBP eCLIP11.34□□□□□ -0.59
COL6A3-214ENST00000493608 RPL13P26373 211 aaKnown RBP11.34□□□□□ -0.59
COL6A3-214ENST00000493608 PSMC2P35998 433 aaKnown RBP11.34□□□□□ -0.59
COL6A3-214ENST00000493608 PIK3CAP42336 1068 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 NDST1P52848 882 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 FAM160A1Q05DH4 1040 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 MTAPQ13126 283 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 NFIL3Q16649 462 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 WDR44Q5JSH3 913 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 DENND5BQ6ZUT9 1274 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 PAQR9Q6ZVX9 377 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 RETREG3Q86VR2 466 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 TAS1R2Q8TE23 839 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 NKD2Q969F2 451 aaPredicted RBP11.34□□□□□ -0.59
COL6A3-214ENST00000493608 CCDC34Q96HJ3 373 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 SPATA17Q96L03 361 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 KCNK16Q96T55 309 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 EBF3Q9H4W6 596 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 THG1LQ9NWX6 298 aaKnown RBP11.34□□□□□ -0.59
COL6A3-214ENST00000493608 HMGXB4Q9UGU5 601 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 FANCMQ8IYD8 2048 aa11.34□□□□□ -0.59
COL6A3-214ENST00000493608 TRAV19A0A0A6YYK7 116 aa11.33□□□□□ -0.6
COL6A3-214ENST00000493608 PRR23AA6NEV1 266 aa11.33□□□□□ -0.6
COL6A3-214ENST00000493608 OTOL1A6NHN0 477 aaPredicted RBP11.33□□□□□ -0.6
COL6A3-214ENST00000493608 TRIM66O15016 1216 aa11.33□□□□□ -0.6
COL6A3-214ENST00000493608 MAPK13O15264 365 aa11.33□□□□□ -0.6
COL6A3-214ENST00000493608 ASS1P00966 412 aaKnown RBP11.33□□□□□ -0.6
COL6A3-214ENST00000493608 CKMP06732 381 aa11.33□□□□□ -0.6
COL6A3-214ENST00000493608 USP17L7P0C7H9 530 aa11.33□□□□□ -0.6
COL6A3-214ENST00000493608 CHRNB1P11230 501 aa11.33□□□□□ -0.6
COL6A3-214ENST00000493608 ARSAP15289 507 aa11.33□□□□□ -0.6
COL6A3-214ENST00000493608 HDCP19113 662 aa11.33□□□□□ -0.6
COL6A3-214ENST00000493608 CTHP32929 405 aa11.33□□□□□ -0.6
COL6A3-214ENST00000493608 PMS1P54277 932 aaKnown RBP11.33□□□□□ -0.6
COL6A3-214ENST00000493608 PON2Q15165 354 aa11.33□□□□□ -0.6
COL6A3-214ENST00000493608 ZCWPW2Q504Y3 356 aa11.33□□□□□ -0.6
COL6A3-214ENST00000493608 ZNF658Q5TYW1 1059 aaPredicted RBP11.33□□□□□ -0.6
COL6A3-214ENST00000493608 ANKRD40Q6AI12 368 aa11.33□□□□□ -0.6
COL6A3-214ENST00000493608 INTS8Q75QN2 995 aaKnown RBP11.33□□□□□ -0.6
COL6A3-214ENST00000493608 C12orf29Q8N999 325 aa11.33□□□□□ -0.6
COL6A3-214ENST00000493608 SMARCE1Q969G3 411 aa11.33□□□□□ -0.6
COL6A3-214ENST00000493608 C8orf48Q96LL4 319 aa11.33□□□□□ -0.6
COL6A3-214ENST00000493608 FAM83CQ9BQN1 747 aa11.33□□□□□ -0.6
COL6A3-214ENST00000493608 C8orf33Q9H7E9 229 aaPredicted RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms