RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 GALNT4Q8N4A0 578 aa13.59□□□□□ -0.23
COL6A3-212ENST00000491769 PDGFCQ9NRA1 345 aa13.59□□□□□ -0.23
COL6A3-212ENST00000491769 SPG21Q9NZD8 308 aa13.59□□□□□ -0.23
COL6A3-212ENST00000491769 LZTS1Q9Y250 596 aa13.59□□□□□ -0.23
COL6A3-212ENST00000491769 MYMKA6NI61 221 aa13.59□□□□□ -0.23
COL6A3-212ENST00000491769 CAP2P40123 477 aa13.59□□□□□ -0.23
COL6A3-212ENST00000491769 LHX1P48742 406 aa13.59□□□□□ -0.23
COL6A3-212ENST00000491769 AGAP9Q5VTM2 703 aa13.59□□□□□ -0.23
COL6A3-212ENST00000491769 TRAPPC11Q7Z392 1133 aa13.59□□□□□ -0.23
COL6A3-212ENST00000491769 DNAJB3Q8WWF6 145 aa13.59□□□□□ -0.23
COL6A3-212ENST00000491769 OSBPL8Q9BZF1 889 aa13.59□□□□□ -0.23
COL6A3-212ENST00000491769 TRIM9Q9C026 710 aa13.59□□□□□ -0.23
COL6A3-212ENST00000491769 AAR2Q9Y312 384 aaKnown RBP13.59□□□□□ -0.23
COL6A3-212ENST00000491769 MTA2O94776 668 aa13.58□□□□□ -0.23
COL6A3-212ENST00000491769 STIP1P31948 543 aaKnown RBP13.58□□□□□ -0.23
COL6A3-212ENST00000491769 PLOD1Q02809 727 aaPredicted RBP13.58□□□□□ -0.23
COL6A3-212ENST00000491769 TRIM71Q2Q1W2 868 aaKnown RBP13.58□□□□□ -0.23
COL6A3-212ENST00000491769 MPZL3Q6UWV2 235 aa13.58□□□□□ -0.23
COL6A3-212ENST00000491769 LPCAT1Q8NF37 534 aa13.58□□□□□ -0.23
COL6A3-212ENST00000491769 CHORDC1Q9UHD1 332 aaPredicted RBP13.58□□□□□ -0.23
COL6A3-212ENST00000491769 TMCC3Q9ULS5 477 aa13.58□□□□□ -0.23
COL6A3-212ENST00000491769 CRTAMO95727 393 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 RASA1P20936 1047 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 BACE1P56817 501 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 CYP4Z1Q86W10 505 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 TUBGCP3Q96CW5 907 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 STAMBPL1Q96FJ0 436 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 OMDQ99983 421 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 SMARCAL1Q9NZC9 954 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 TRIM10Q9UDY6 481 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 DBR1Q9UK59 544 aaKnown RBP13.58□□□□□ -0.24
COL6A3-212ENST00000491769 RBP3P10745 1247 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 UCHL3P15374 230 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 PTPN3P26045 913 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 FEN1P39748 380 aaKnown RBP13.58□□□□□ -0.24
COL6A3-212ENST00000491769 NME5P56597 212 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 FICDQ9BVA6 458 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 RUVBL2Q9Y230 463 aaKnown RBP13.58□□□□□ -0.24
COL6A3-212ENST00000491769 PLA2G6O60733 806 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 CAPN1P07384 714 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 MARSP56192 900 aaKnown RBP13.58□□□□□ -0.24
COL6A3-212ENST00000491769 SLFN11Q7Z7L1 901 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 UNC45BQ8IWX7 931 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 PCDHB5Q9Y5E4 795 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 FAM205CA6NFA0 338 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 POU1F1P28069 291 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 THOP1P52888 689 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 SBK1Q52WX2 424 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 DSG4Q86SJ6 1040 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 GAS2L3Q86XJ1 694 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 CD302Q8IX05 232 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 KIAA2013Q8IYS2 634 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 ZSCAN18Q8TBC5 510 aaPredicted RBP13.58□□□□□ -0.24
COL6A3-212ENST00000491769 DTX3LQ8TDB6 740 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 CDK5RAP1Q96SZ6 601 aaKnown RBP13.58□□□□□ -0.24
COL6A3-212ENST00000491769 MYCBPQ99417 103 aaPredicted RBP13.58□□□□□ -0.24
COL6A3-212ENST00000491769 BLOC1S6Q9UL45 172 aa13.58□□□□□ -0.24
COL6A3-212ENST00000491769 CLK1P49759 484 aaKnown RBP13.57□□□□□ -0.24
COL6A3-212ENST00000491769 CUL2Q13617 745 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 SLC45A4Q5BKX6 768 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 SMG5Q9UPR3 1016 aaKnown RBP13.57□□□□□ -0.24
COL6A3-212ENST00000491769 CPSF1Q10570 1443 aaKnown RBP13.57□□□□□ -0.24
COL6A3-212ENST00000491769 NBNO60934 754 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 DEAF1O75398 565 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-212ENST00000491769 RHOBTB3O94955 611 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 RPLP2P05387 115 aaKnown RBP13.57□□□□□ -0.24
COL6A3-212ENST00000491769 SNRPAP09012 282 aaKnown RBP13.57□□□□□ -0.24
COL6A3-212ENST00000491769 FDFT1P37268 417 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 CAPRIN2Q6IMN6 1127 aaKnown RBP13.57□□□□□ -0.24
COL6A3-212ENST00000491769 ZNF544Q6NX49 715 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 NLRP14Q86W24 1093 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 CENPLQ8N0S6 344 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-212ENST00000491769 FMR1NBQ8N0W7 255 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-212ENST00000491769 GRAMD1AQ96CP6 724 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 CCT7Q99832 543 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 RANBP17Q9H2T7 1088 aaKnown RBP13.57□□□□□ -0.24
COL6A3-212ENST00000491769 A0A087WZ62 844 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 A0A087X0T9 212 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 TBC1D3BA6NDS4 549 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 VSNL1P62760 191 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 SHC4Q6S5L8 630 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 ADI1Q9BV57 179 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 ANKRD65E5RJM6 399 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 AMD1P17707 334 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 ITIH2P19823 946 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 RDM1Q8NG50 284 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 ZNF333Q96JL9 665 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 PRMT6Q96LA8 375 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-212ENST00000491769 ATP6V1G3Q96LB4 118 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 RHBGQ9H310 441 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 ARMC7Q9H6L4 198 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 MCM8Q9UJA3 840 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.57□□□□□ -0.24
COL6A3-212ENST00000491769 hCG_2014768A0A024R1R8 64 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 COMTP21964 271 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 DSG3P32926 999 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 CCR4P51679 360 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 TGFB2P61812 414 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 DPP10Q8N608 796 aa13.57□□□□□ -0.24
COL6A3-212ENST00000491769 RNASE11Q8TAA1 199 aaKnown RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms