RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 FBXO44Q9H4M3 255 aa17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 TRPC7Q9HCX4 862 aa17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 IL37Q9NZH6 218 aa17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 HESX1Q9UBX0 185 aa17.21■□□□□ 0.35
MSH5-SAPCD1-206ENST00000491552 MUC3AQ02505 3323 aa17.2■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 TRAV19A0A0A6YYK7 116 aa17.2■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 HEPACAM2A8MVW5 462 aa17.2■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 O00370 1275 aa17.2■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 DPYSL4O14531 572 aa17.2■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 PRAMEF12O95522 483 aa17.2■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 VIPR2P41587 438 aa17.2■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 STILQ15468 1287 aa17.2■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 NFKBIBQ15653 356 aa17.2■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 VITQ6UXI7 678 aa17.2■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 GPRIN1Q7Z2K8 1008 aa17.2■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 TTC30AQ86WT1 665 aa17.2■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 DEPDC1BQ8WUY9 529 aa17.2■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 TFAP2BQ92481 460 aa17.2■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 LSM14BQ9BX40 385 aaKnown RBP17.2■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 SLC2A4RGQ9NR83 387 aa17.2■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 OBP2AQ9NY56 170 aa17.2■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 DNAJC12Q9UKB3 198 aa17.2■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 AJAP1Q9UKB5 411 aaPredicted RBP17.2■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 NCANO14594 1321 aa17.2■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 NCOR1O75376 2440 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 MYO10Q9HD67 2058 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 MYH10P35580 1976 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 FAM92AA1XBS5 289 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 C2orf78A6NCI8 922 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 ZNF840PA6NDX5 716 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 FAM86C2PA6NEL3 165 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 TMEM221A6NGB7 291 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 BECN2A8MW95 431 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 M0R296 226 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 CFHP08603 1231 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 PFKLP17858 780 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 BRD2P25440 801 aaKnown RBP17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 PDE6CP51160 858 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 BST2Q10589 180 aaKnown RBP17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 GRM2Q14416 872 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 SMYD5Q6GMV2 418 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 DPY19L2P1Q6NXN4 242 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 LCLAT1Q6UWP7 414 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 GPIHBP1Q8IV16 184 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 SHC3Q92529 594 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 RSPRY1Q96DX4 576 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 ASIC4Q96FT7 647 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 UBXN6Q9BZV1 441 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 SMG9Q9H0W8 520 aaKnown RBP17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 C11orf16Q9NQ32 467 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 GMIPQ9P107 970 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 FBXL21Q9UKT6 434 aa17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 ZNF638Q14966 1978 aaKnown RBP17.19■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 BDP1A6H8Y1 2624 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 LRRC10BA6NIK2 292 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 LGALS16A8MUM7 142 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 XPO1O14980 1071 aaKnown RBP17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 GPR37L1O60883 481 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 ABL1P00519 1130 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 CALCAP01258 141 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 USP17L7P0C7H9 530 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 SETSIPP0DME0 302 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 ATP1A3P13637 1013 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 PSMC3P17980 439 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 RFX1P22670 979 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 USP8P40818 1118 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 GPC5P78333 572 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 PDE4CQ08493 712 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 IQCB1Q15051 598 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 CNGA2Q16280 664 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 TMEM31Q5JXX7 168 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 KLHDC7AQ5VTJ3 777 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 MFSD6LQ8IWD5 586 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 CELF5Q8N6W0 485 aaKnown RBP17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 ARL14EPQ8N8R7 260 aaPredicted RBP17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 ZSWIM1Q9BR11 485 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 TRMT61BQ9BVS5 477 aaKnown RBP17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 KIF9Q9HAQ2 790 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 PLCB1Q9NQ66 1216 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 TDP1Q9NUW8 608 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 SCML2Q9UQR0 700 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 FHOD1Q9Y613 1164 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 MYO16Q9Y6X6 1858 aa17.18■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 ANAPC1Q9H1A4 1944 aa17.17■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 M0QYV0 167 aa17.17■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 CAVIN2O95810 425 aa17.17■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 CKMP06732 381 aa17.17■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 GNA15P30679 374 aa17.17■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 KIF11P52732 1056 aa17.17■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 ZNF268Q14587 947 aaPredicted RBP17.17■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 PKDCCQ504Y2 493 aa17.17■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 SNX30Q5VWJ9 437 aa17.17■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 APTXQ7Z2E3 356 aaKnown RBP17.17■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 PIGZQ86VD9 579 aa17.17■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 YAF2Q8IY57 180 aa17.17■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 UBA3Q8TBC4 463 aa17.17■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 BPIFB1Q8TDL5 484 aa17.17■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 USP13Q92995 863 aaPredicted RBP17.17■□□□□ 0.34
MSH5-SAPCD1-206ENST00000491552 SLC22A12Q96S37 553 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms