RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 COPAP53621 1224 aa6.39□□□□□ -1.39
USP48-209ENST00000487880 KCNAB1Q14722 419 aa6.39□□□□□ -1.39
USP48-209ENST00000487880 MPEG1Q2M385 716 aa6.39□□□□□ -1.39
USP48-209ENST00000487880 PEG10Q86TG7 708 aaKnown RBP6.39□□□□□ -1.39
USP48-209ENST00000487880 CYP2W1Q8TAV3 490 aa6.39□□□□□ -1.39
USP48-209ENST00000487880 SMCR8Q8TEV9 937 aaPredicted RBP6.39□□□□□ -1.39
USP48-209ENST00000487880 SELENOOQ9BVL4 669 aa6.39□□□□□ -1.39
USP48-209ENST00000487880 EIF2AQ9BY44 585 aaKnown RBP6.39□□□□□ -1.39
USP48-209ENST00000487880 MAGEB5Q9BZ81 275 aa6.39□□□□□ -1.39
USP48-209ENST00000487880 GLOD4Q9HC38 313 aa6.39□□□□□ -1.39
USP48-209ENST00000487880 LRIT1Q9P2V4 623 aa6.39□□□□□ -1.39
USP48-209ENST00000487880 TAGLN3Q9UI15 199 aa6.39□□□□□ -1.39
USP48-209ENST00000487880 VPS51Q9UID3 782 aa6.39□□□□□ -1.39
USP48-209ENST00000487880 ABHD14A-ACY1A0A1B0GW23 586 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 CCDC151A5D8V7 595 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 RGS10O43665 173 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 ELFN1P0C7U0 828 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 SETSIPP0DME0 302 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 ZFXP17010 805 aaPredicted RBP6.38□□□□□ -1.39
USP48-209ENST00000487880 ABCB4P21439 1286 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 EEF1GP26641 437 aaKnown RBP6.38□□□□□ -1.39
USP48-209ENST00000487880 UQCRC1P31930 480 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 GRIA3P42263 894 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 CLCN2P51788 898 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 ITGA8P53708 1063 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 COL10A1Q03692 680 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 BMPR2Q13873 1038 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 LY6KQ17RY6 165 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 TREML2Q5T2D2 321 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 MANEALQ5VSG8 457 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 MZT2AQ6P582 158 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 USP17L6PQ6QN14 398 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 KIAA0408Q6ZU52 694 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 LRRC46Q96FV0 321 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 ZDHHC12Q96GR4 267 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 ZNF668Q96K58 619 aaPredicted RBP6.38□□□□□ -1.39
USP48-209ENST00000487880 FAM227BQ96M60 508 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 RPS6KC1Q96S38 1066 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 C17orf80Q9BSJ5 609 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 MAN2B2Q9Y2E5 1009 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 PCDHGB2Q9Y5G2 931 aa6.38□□□□□ -1.39
USP48-209ENST00000487880 AKAP8O43823 692 aaKnown RBP6.37□□□□□ -1.39
USP48-209ENST00000487880 RAMP2O60895 175 aa6.37□□□□□ -1.39
USP48-209ENST00000487880 PEX14O75381 377 aa6.37□□□□□ -1.39
USP48-209ENST00000487880 URI1O94763 535 aaPredicted RBP6.37□□□□□ -1.39
USP48-209ENST00000487880 RHOBTB3O94955 611 aa6.37□□□□□ -1.39
USP48-209ENST00000487880 ONECUT2O95948 504 aa6.37□□□□□ -1.39
USP48-209ENST00000487880 HGFP14210 728 aa6.37□□□□□ -1.39
USP48-209ENST00000487880 EPHA3P29320 983 aa6.37□□□□□ -1.39
USP48-209ENST00000487880 PRKAR1BP31321 381 aa6.37□□□□□ -1.39
USP48-209ENST00000487880 PPM1AP35813 382 aa6.37□□□□□ -1.39
USP48-209ENST00000487880 IL6STP40189 918 aaPredicted RBP6.37□□□□□ -1.39
USP48-209ENST00000487880 SIM1P81133 766 aaPredicted RBP6.37□□□□□ -1.39
USP48-209ENST00000487880 TXLNBQ8N3L3 684 aa6.37□□□□□ -1.39
USP48-209ENST00000487880 ACRBPQ8NEB7 543 aa6.37□□□□□ -1.39
USP48-209ENST00000487880 PMM1Q92871 262 aa6.37□□□□□ -1.39
USP48-209ENST00000487880 RSPRY1Q96DX4 576 aa6.37□□□□□ -1.39
USP48-209ENST00000487880 SERTAD4Q9NUC0 356 aa6.37□□□□□ -1.39
USP48-209ENST00000487880 GABRQQ9UN88 632 aa6.37□□□□□ -1.39
USP48-209ENST00000487880 HPSEQ9Y251 543 aa6.37□□□□□ -1.39
USP48-209ENST00000487880 LINC00473A8K010 186 aa6.36□□□□□ -1.39
USP48-209ENST00000487880 AGPSO00116 658 aa6.36□□□□□ -1.39
USP48-209ENST00000487880 MGST3O14880 152 aa6.36□□□□□ -1.39
USP48-209ENST00000487880 PLA2G6O60733 806 aa6.36□□□□□ -1.39
USP48-209ENST00000487880 VNN1O95497 513 aa6.36□□□□□ -1.39
USP48-209ENST00000487880 FESP07332 822 aa6.36□□□□□ -1.39
USP48-209ENST00000487880 NR2F6P10588 404 aa6.36□□□□□ -1.39
USP48-209ENST00000487880 JUPP14923 745 aa6.36□□□□□ -1.39
USP48-209ENST00000487880 STK3Q13188 491 aa6.36□□□□□ -1.39
USP48-209ENST00000487880 BIRC2Q13490 618 aa6.36□□□□□ -1.39
USP48-209ENST00000487880 SLC9A4Q6AI14 798 aa6.36□□□□□ -1.39
USP48-209ENST00000487880 CRTC1Q6UUV9 634 aa6.36□□□□□ -1.39
USP48-209ENST00000487880 ZNF551Q7Z340 670 aaPredicted RBP6.36□□□□□ -1.39
USP48-209ENST00000487880 GLIS1Q8NBF1 620 aa6.36□□□□□ -1.39
USP48-209ENST00000487880 R3HDM4Q96D70 268 aa6.36□□□□□ -1.39
USP48-209ENST00000487880 VN1R3Q9BXE9 311 aa6.36□□□□□ -1.39
USP48-209ENST00000487880 STK33Q9BYT3 514 aa6.36□□□□□ -1.39
USP48-209ENST00000487880 ARFGAP3Q9NP61 516 aa6.36□□□□□ -1.39
USP48-209ENST00000487880 DNAJB11Q9UBS4 358 aa6.36□□□□□ -1.39
USP48-209ENST00000487880 DAAM1Q9Y4D1 1078 aa6.36□□□□□ -1.39
USP48-209ENST00000487880 DMRT1Q9Y5R6 373 aa6.36□□□□□ -1.39
USP48-209ENST00000487880 FAM234BA2RU67 622 aa6.35□□□□□ -1.39
USP48-209ENST00000487880 TJP3O95049 919 aa6.35□□□□□ -1.39
USP48-209ENST00000487880 NDST3O95803 873 aa6.35□□□□□ -1.39
USP48-209ENST00000487880 MST1P26927 711 aa6.35□□□□□ -1.39
USP48-209ENST00000487880 PLA2G5P39877 138 aa6.35□□□□□ -1.39
USP48-209ENST00000487880 RARRES1P49788 294 aa6.35□□□□□ -1.39
USP48-209ENST00000487880 PGDP52209 483 aa6.35□□□□□ -1.39
USP48-209ENST00000487880 TIRAPP58753 221 aa6.35□□□□□ -1.39
USP48-209ENST00000487880 FSTL1Q12841 308 aa6.35□□□□□ -1.39
USP48-209ENST00000487880 PLAC9Q5JTB6 97 aa6.35□□□□□ -1.39
USP48-209ENST00000487880 CAND1Q86VP6 1230 aaKnown RBP6.35□□□□□ -1.39
USP48-209ENST00000487880 KRT73Q86Y46 540 aa6.35□□□□□ -1.39
USP48-209ENST00000487880 ZNF566Q969W8 418 aa6.35□□□□□ -1.39
USP48-209ENST00000487880 TMEM41AQ96HV5 264 aa6.35□□□□□ -1.39
USP48-209ENST00000487880 ZBTB45Q96K62 511 aaPredicted RBP6.35□□□□□ -1.39
USP48-209ENST00000487880 SNX27Q96L92 541 aa6.35□□□□□ -1.39
USP48-209ENST00000487880 TTLL2Q9BWV7 592 aa6.35□□□□□ -1.39
USP48-209ENST00000487880 WDR12Q9GZL7 423 aaKnown RBP6.35□□□□□ -1.39
USP48-209ENST00000487880 ZBTB26Q9HCK0 441 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms