RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 CLDN5O00501 218 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 VNN1O95497 513 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 SERPINC1P01008 464 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 TPM3P06753 285 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 CCDC130P13994 396 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 GJA1P17302 382 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 CEBPBP17676 345 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 PPP3CCP48454 512 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 KPNA1P52294 538 aaPredicted RBP8.51□□□□□ -1.05
USP40-216ENST00000485943 MAP3K7CLP57077 242 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 SNX16P57768 344 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 AMPD2Q01433 879 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 TYRO3Q06418 890 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 CUL2Q13617 745 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 TEAD2Q15562 447 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 PTPN21Q16825 1174 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 ARHGAP44Q17R89 818 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 KLHL40Q2TBA0 621 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 CBWD6Q4V339 395 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 CBWD3Q5JTY5 395 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 TMEM31Q5JXX7 168 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 CBWD5Q5RIA9 395 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 RSRC2Q7L4I2 434 aaKnown RBP8.51□□□□□ -1.05
USP40-216ENST00000485943 ENOSF1Q7L5Y1 443 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 FAM35AQ86V20 835 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 LRRTM3Q86VH5 581 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 NUP93Q8N1F7 819 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 SIX6OS1Q8N1H7 587 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 MAB21L3Q8N8X9 362 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 ITFG1Q8TB96 612 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 ZSCAN18Q8TBC5 510 aaPredicted RBP8.51□□□□□ -1.05
USP40-216ENST00000485943 SLC2A14Q8TDB8 520 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 KBTBD7Q8WVZ9 684 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 SLC35C1Q96A29 364 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 RNF166Q96A37 237 aaPredicted RBP8.51□□□□□ -1.05
USP40-216ENST00000485943 ELMO3Q96BJ8 720 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 BORCS6Q96GS4 357 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 TMEM176AQ96HP8 235 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 DUSP9Q99956 384 aaKnown RBP8.51□□□□□ -1.05
USP40-216ENST00000485943 KXD1Q9BQD3 176 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 CRACR2AQ9BSW2 395 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 C1QTNF2Q9BXJ5 285 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 INTS2Q9H0H0 1204 aaKnown RBP8.51□□□□□ -1.05
USP40-216ENST00000485943 DNAJC25Q9H1X3 360 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 VPS16Q9H269 839 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 DPEP3Q9H4B8 488 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 FAM124BQ9H5Z6 455 aaPredicted RBP8.51□□□□□ -1.05
USP40-216ENST00000485943 SYNCQ9H7C4 482 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 KCNK12Q9HB15 430 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 LRRC4Q9HBW1 653 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 SYCE3A1L190 88 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 M0QYV0 167 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 ZNF263O14978 683 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 THAP12O43422 761 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 USP17L7P0C7H9 530 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 RALAP11233 206 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 BMP6P22004 513 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 YWHAQP27348 245 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 ASPAP45381 313 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 GPR15P49685 360 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 ZNF165P49910 485 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 CYP4F8P98187 520 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 KCNC4Q03721 635 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 STILQ15468 1287 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 ANO6Q4KMQ2 910 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 VWA3BQ502W6 1294 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 PLA2G2CQ5R387 149 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 FAM171BQ6P995 826 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 RRAGAQ7L523 313 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 CACNA2D4Q7Z3S7 1137 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 TRIM59Q8IWR1 403 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 NPAS3Q8IXF0 933 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 DEPDC4Q8N2C3 294 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 AOPEPQ8N6M6 819 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 TTC9BQ8N6N2 239 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 MSANTD4Q8NCY6 345 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 EHBP1Q8NDI1 1231 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 FLCNQ8NFG4 579 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 ENOX1Q8TC92 643 aaKnown RBP8.5□□□□□ -1.05
USP40-216ENST00000485943 DEPDC1BQ8WUY9 529 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 SMARCD2Q92925 531 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 CEP295NLQ96MC4 621 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 NOX5Q96PH1 765 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 SPAG5Q96R06 1193 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 MYADMQ96S97 322 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 TRMT61BQ9BVS5 477 aaKnown RBP8.5□□□□□ -1.05
USP40-216ENST00000485943 BCO2Q9BYV7 579 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 ZNF518BQ9C0D4 1074 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 XYLT2Q9H1B5 865 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 NDST4Q9H3R1 872 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 TASP1Q9H6P5 420 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 CRTAC1Q9NQ79 661 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 TLR8Q9NR97 1041 aaKnown RBP8.5□□□□□ -1.05
USP40-216ENST00000485943 ST7Q9NRC1 585 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 TMLHEQ9NVH6 421 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 TAB2Q9NYJ8 693 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 CEP72Q9P209 647 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 EPS15L1Q9UBC2 864 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 LSM7Q9UK45 103 aaKnown RBP8.5□□□□□ -1.05
USP40-216ENST00000485943 HCN4Q9Y3Q4 1203 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms