RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 CRYBG2Q8N1P7 616 aa19.74■□□□□ 0.75
COL7A1-209ENST00000474432 ZMIZ2Q8NF64 920 aa19.74■□□□□ 0.75
COL7A1-209ENST00000474432 ENGASEQ8NFI3 743 aa19.74■□□□□ 0.75
COL7A1-209ENST00000474432 TAF4BQ92750 862 aa19.74■□□□□ 0.75
COL7A1-209ENST00000474432 APOBEC3GQ9HC16 384 aaKnown RBP19.74■□□□□ 0.75
COL7A1-209ENST00000474432 DUS2Q9NX74 493 aaKnown RBP19.74■□□□□ 0.75
COL7A1-209ENST00000474432 SMG5Q9UPR3 1016 aaKnown RBP19.74■□□□□ 0.75
COL7A1-209ENST00000474432 FRMD4BQ9Y2L6 1034 aa19.74■□□□□ 0.75
COL7A1-209ENST00000474432 CHURC1-FNTBB4DL54 471 aa19.73■□□□□ 0.75
COL7A1-209ENST00000474432 HRO43593 1189 aa19.73■□□□□ 0.75
COL7A1-209ENST00000474432 BEST1O76090 585 aa19.73■□□□□ 0.75
COL7A1-209ENST00000474432 KIF20AO95235 890 aa19.73■□□□□ 0.75
COL7A1-209ENST00000474432 EGFP01133 1207 aa19.73■□□□□ 0.75
COL7A1-209ENST00000474432 GCLMP48507 274 aa19.73■□□□□ 0.75
COL7A1-209ENST00000474432 FNTBP49356 437 aa19.73■□□□□ 0.75
COL7A1-209ENST00000474432 NDST1P52848 882 aa19.73■□□□□ 0.75
COL7A1-209ENST00000474432 NRLP54845 237 aa19.73■□□□□ 0.75
COL7A1-209ENST00000474432 PNOCQ13519 176 aa19.73■□□□□ 0.75
COL7A1-209ENST00000474432 GAB4Q2WGN9 574 aa19.73■□□□□ 0.75
COL7A1-209ENST00000474432 KIAA2013Q8IYS2 634 aa19.73■□□□□ 0.75
COL7A1-209ENST00000474432 NUP93Q8N1F7 819 aa19.73■□□□□ 0.75
COL7A1-209ENST00000474432 SCAMP5Q8TAC9 235 aa19.73■□□□□ 0.75
COL7A1-209ENST00000474432 TAS1R2Q8TE23 839 aa19.73■□□□□ 0.75
COL7A1-209ENST00000474432 CCDC47Q96A33 483 aaKnown RBP19.73■□□□□ 0.75
COL7A1-209ENST00000474432 TWNKQ96RR1 684 aa19.73■□□□□ 0.75
COL7A1-209ENST00000474432 SMOQ99835 787 aa19.73■□□□□ 0.75
COL7A1-209ENST00000474432 CACNA1AO00555 2505 aa19.72■□□□□ 0.75
COL7A1-209ENST00000474432 FAM92AA1XBS5 289 aa19.72■□□□□ 0.75
COL7A1-209ENST00000474432 LEFTY2O00292 366 aa19.72■□□□□ 0.75
COL7A1-209ENST00000474432 TGM1P22735 817 aa19.72■□□□□ 0.75
COL7A1-209ENST00000474432 HOXA6P31267 233 aa19.72■□□□□ 0.75
COL7A1-209ENST00000474432 PPP3CCP48454 512 aa19.72■□□□□ 0.75
COL7A1-209ENST00000474432 ENPEPQ07075 957 aa19.72■□□□□ 0.75
COL7A1-209ENST00000474432 INTS8Q75QN2 995 aaKnown RBP19.72■□□□□ 0.75
COL7A1-209ENST00000474432 FAM186BQ8IYM0 893 aa19.72■□□□□ 0.75
COL7A1-209ENST00000474432 TNIP3Q96KP6 325 aa19.72■□□□□ 0.75
COL7A1-209ENST00000474432 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.72■□□□□ 0.75
COL7A1-209ENST00000474432 POLR3BQ9NW08 1133 aaPredicted RBP19.72■□□□□ 0.75
COL7A1-209ENST00000474432 EHD2Q9NZN4 543 aa19.72■□□□□ 0.75
COL7A1-209ENST00000474432 MYOFQ9NZM1 2061 aa19.72■□□□□ 0.75
COL7A1-209ENST00000474432 MYH10P35580 1976 aa19.72■□□□□ 0.75
COL7A1-209ENST00000474432 EML5Q05BV3 1969 aa19.72■□□□□ 0.75
COL7A1-209ENST00000474432 CCDC130P13994 396 aa19.71■□□□□ 0.75
COL7A1-209ENST00000474432 YWHAQP27348 245 aa19.71■□□□□ 0.75
COL7A1-209ENST00000474432 PIK3CAP42336 1068 aa19.71■□□□□ 0.75
COL7A1-209ENST00000474432 IFNAR2P48551 515 aa19.71■□□□□ 0.75
COL7A1-209ENST00000474432 PGFP49763 221 aa19.71■□□□□ 0.75
COL7A1-209ENST00000474432 INCA1Q0VD86 236 aa19.71■□□□□ 0.75
COL7A1-209ENST00000474432 GRSF1Q12849 480 aaKnown RBP eCLIP19.71■□□□□ 0.75
COL7A1-209ENST00000474432 SRSF5Q13243 272 aaKnown RBP19.71■□□□□ 0.75
COL7A1-209ENST00000474432 ADAM9Q13443 819 aa19.71■□□□□ 0.75
COL7A1-209ENST00000474432 PPP2R5DQ14738 602 aa19.71■□□□□ 0.75
COL7A1-209ENST00000474432 UNC93AQ86WB7 457 aa19.71■□□□□ 0.75
COL7A1-209ENST00000474432 CPA6Q8N4T0 437 aa19.71■□□□□ 0.75
COL7A1-209ENST00000474432 C12orf29Q8N999 325 aa19.71■□□□□ 0.75
COL7A1-209ENST00000474432 TTC16Q8NEE8 873 aa19.71■□□□□ 0.75
COL7A1-209ENST00000474432 SPATA20Q8TB22 786 aa19.71■□□□□ 0.75
COL7A1-209ENST00000474432 WHAMMQ8TF30 809 aa19.71■□□□□ 0.75
COL7A1-209ENST00000474432 EEF2KMTQ96G04 330 aa19.71■□□□□ 0.75
COL7A1-209ENST00000474432 ZFRQ96KR1 1074 aaKnown RBP19.71■□□□□ 0.75
COL7A1-209ENST00000474432 P2RY13Q9BPV8 354 aa19.71■□□□□ 0.75
COL7A1-209ENST00000474432 CSNK1G1Q9HCP0 422 aa19.71■□□□□ 0.75
COL7A1-209ENST00000474432 CPQQ9Y646 472 aa19.71■□□□□ 0.75
COL7A1-209ENST00000474432 ZDHHC11BP0C7U3 371 aa19.7■□□□□ 0.74
COL7A1-209ENST00000474432 PSMC2P35998 433 aaKnown RBP19.7■□□□□ 0.74
COL7A1-209ENST00000474432 PDE6CP51160 858 aa19.7■□□□□ 0.74
COL7A1-209ENST00000474432 SLC5A3P53794 718 aa19.7■□□□□ 0.74
COL7A1-209ENST00000474432 IFRD2Q12894 506 aaPredicted RBP19.7■□□□□ 0.74
COL7A1-209ENST00000474432 EDRF1Q3B7T1 1238 aa19.7■□□□□ 0.74
COL7A1-209ENST00000474432 SNX30Q5VWJ9 437 aa19.7■□□□□ 0.74
COL7A1-209ENST00000474432 SLC2A14Q8TDB8 520 aa19.7■□□□□ 0.74
COL7A1-209ENST00000474432 SEMA4DQ92854 862 aa19.7■□□□□ 0.74
COL7A1-209ENST00000474432 ATP2A3Q93084 1043 aa19.7■□□□□ 0.74
COL7A1-209ENST00000474432 SMARCD1Q96GM5 515 aa19.7■□□□□ 0.74
COL7A1-209ENST00000474432 SLITRK1Q96PX8 696 aa19.7■□□□□ 0.74
COL7A1-209ENST00000474432 DMAP1Q9NPF5 467 aaPredicted RBP19.7■□□□□ 0.74
COL7A1-209ENST00000474432 CHORDC1Q9UHD1 332 aaPredicted RBP19.7■□□□□ 0.74
COL7A1-209ENST00000474432 ANTXRLA6NF34 631 aa19.69■□□□□ 0.74
COL7A1-209ENST00000474432 RNF40O75150 1001 aa19.69■□□□□ 0.74
COL7A1-209ENST00000474432 AP1G2O75843 785 aa19.69■□□□□ 0.74
COL7A1-209ENST00000474432 RTN3O95197 1032 aaPredicted RBP19.69■□□□□ 0.74
COL7A1-209ENST00000474432 P4HA1P13674 534 aa19.69■□□□□ 0.74
COL7A1-209ENST00000474432 RPL13P26373 211 aaKnown RBP19.69■□□□□ 0.74
COL7A1-209ENST00000474432 OPRD1P41143 372 aa19.69■□□□□ 0.74
COL7A1-209ENST00000474432 PRCPP42785 496 aa19.69■□□□□ 0.74
COL7A1-209ENST00000474432 HEATR6Q6AI08 1181 aaKnown RBP19.69■□□□□ 0.74
COL7A1-209ENST00000474432 LONP2Q86WA8 852 aa19.69■□□□□ 0.74
COL7A1-209ENST00000474432 ADGRG2Q8IZP9 1017 aa19.69■□□□□ 0.74
COL7A1-209ENST00000474432 KIAA1958Q8N8K9 716 aa19.69■□□□□ 0.74
COL7A1-209ENST00000474432 OVCA2Q8WZ82 227 aa19.69■□□□□ 0.74
COL7A1-209ENST00000474432 ERCC4Q92889 916 aaPredicted RBP19.69■□□□□ 0.74
COL7A1-209ENST00000474432 FBXO32Q969P5 355 aa19.69■□□□□ 0.74
COL7A1-209ENST00000474432 RMDN1Q96DB5 314 aa19.69■□□□□ 0.74
COL7A1-209ENST00000474432 MED10Q9BTT4 135 aa19.69■□□□□ 0.74
COL7A1-209ENST00000474432 PARD6AQ9NPB6 346 aa19.69■□□□□ 0.74
COL7A1-209ENST00000474432 KRT82Q9NSB4 513 aa19.69■□□□□ 0.74
COL7A1-209ENST00000474432 FAM49BQ9NUQ9 324 aa19.69■□□□□ 0.74
COL7A1-209ENST00000474432 SMPD4Q9NXE4 827 aa19.69■□□□□ 0.74
COL7A1-209ENST00000474432 DNAH14Q0VDD8 3507 aa19.68■□□□□ 0.74
COL7A1-209ENST00000474432 HHLA1C9JL84 531 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms