RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 CEP295NLQ96MC4 621 aa16.72■□□□□ 0.27
CCDC88B-205ENST00000472524 MMRN2Q9H8L6 949 aa16.72■□□□□ 0.27
CCDC88B-205ENST00000472524 EHD2Q9NZN4 543 aa16.72■□□□□ 0.27
CCDC88B-205ENST00000472524 GCNT4Q9P109 453 aa16.72■□□□□ 0.27
CCDC88B-205ENST00000472524 ATP8B3O60423 1300 aa16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 AKAP3O75969 853 aa16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 PAPSS2O95340 614 aaPredicted RBP16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 HLA-DRAP01903 254 aa16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 RETP07949 1114 aa16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 TRIM49P0CI25 452 aa16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 TRIM49CP0CI26 452 aa16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 HDCP19113 662 aa16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 IFNAR2P48551 515 aa16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 NOP14P78316 857 aaKnown RBP16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 ORC1Q13415 861 aa16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 PNOCQ13519 176 aa16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 CCINQ13939 588 aa16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 PDGFRLQ15198 375 aa16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 SGSM1Q2NKQ1 1148 aa16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 C1orf220Q5T0J3 134 aa16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 FAM35AQ86V20 835 aa16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 LONP2Q86WA8 852 aa16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 FAM186BQ8IYM0 893 aa16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 SMYD4Q8IYR2 804 aaPredicted RBP16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 SH3RF2Q8TEC5 729 aa16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 TTLL2Q9BWV7 592 aa16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 DUS2Q9NX74 493 aaKnown RBP16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 WNT6Q9Y6F9 365 aa16.71■□□□□ 0.27
CCDC88B-205ENST00000472524 SDK1Q7Z5N4 2213 aa16.7■□□□□ 0.26
CCDC88B-205ENST00000472524 EML5Q05BV3 1969 aa16.7■□□□□ 0.26
CCDC88B-205ENST00000472524 GOLGA6L4A6NEF3 574 aa16.7■□□□□ 0.26
CCDC88B-205ENST00000472524 MAPK13O15264 365 aa16.7■□□□□ 0.26
CCDC88B-205ENST00000472524 KRT13P13646 458 aa16.7■□□□□ 0.26
CCDC88B-205ENST00000472524 GCLMP48507 274 aa16.7■□□□□ 0.26
CCDC88B-205ENST00000472524 PDE6CP51160 858 aa16.7■□□□□ 0.26
CCDC88B-205ENST00000472524 TAF10Q12962 218 aa16.7■□□□□ 0.26
CCDC88B-205ENST00000472524 NFIL3Q16649 462 aa16.7■□□□□ 0.26
CCDC88B-205ENST00000472524 INTS8Q75QN2 995 aaKnown RBP16.7■□□□□ 0.26
CCDC88B-205ENST00000472524 ACOT1Q86TX2 421 aa16.7■□□□□ 0.26
CCDC88B-205ENST00000472524 CPA6Q8N4T0 437 aa16.7■□□□□ 0.26
CCDC88B-205ENST00000472524 OSCP1Q8WVF1 389 aa16.7■□□□□ 0.26
CCDC88B-205ENST00000472524 CHFRQ96EP1 664 aa16.7■□□□□ 0.26
CCDC88B-205ENST00000472524 TNIP3Q96KP6 325 aa16.7■□□□□ 0.26
CCDC88B-205ENST00000472524 CNTNAP3BQ96NU0 1288 aa16.7■□□□□ 0.26
CCDC88B-205ENST00000472524 RTKNQ9BST9 563 aa16.7■□□□□ 0.26
CCDC88B-205ENST00000472524 CNTNAP3Q9BZ76 1288 aa16.7■□□□□ 0.26
CCDC88B-205ENST00000472524 HMGXB4Q9UGU5 601 aa16.7■□□□□ 0.26
CCDC88B-205ENST00000472524 ZNF840PA6NDX5 716 aa16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 IKBKBO14920 756 aa16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 ASS1P00966 412 aaKnown RBP16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 CCDC130P13994 396 aa16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 RPL13P26373 211 aaKnown RBP16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 PSMC2P35998 433 aaKnown RBP16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 ASPAP45381 313 aa16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 NDST1P52848 882 aa16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 NUCB2P80303 420 aa16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 GRSF1Q12849 480 aaKnown RBP eCLIP16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 ADAM9Q13443 819 aa16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 FMR1NBQ8N0W7 255 aaPredicted RBP16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 NUP93Q8N1F7 819 aa16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 TAF4BQ92750 862 aa16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 FBXO32Q969P5 355 aa16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 EEF2KMTQ96G04 330 aa16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 SMARCD1Q96GM5 515 aa16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 SLITRK1Q96PX8 696 aa16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 KCNK16Q96T55 309 aa16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 IMPG2Q9BZV3 1241 aa16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 ECT2Q9H8V3 914 aa16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 KRT82Q9NSB4 513 aa16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 SEMA4GQ9NTN9 838 aa16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 ARHGAP26Q9UNA1 814 aa16.69■□□□□ 0.26
CCDC88B-205ENST00000472524 MYO18AQ92614 2054 aaKnown RBP16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 AP1G2O75843 785 aa16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 RTN3O95197 1032 aaPredicted RBP16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 YWHAQP27348 245 aa16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 CNR2P34972 360 aa16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 GJA4P35212 333 aa16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 PPP3CCP48454 512 aa16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 AMPD2Q01433 879 aa16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 PPP3CAQ08209 521 aa16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 EML3Q32P44 896 aa16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 ZCWPW2Q504Y3 356 aa16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 TMEM196Q5HYL7 178 aa16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 NAIF1Q69YI7 327 aaPredicted RBP16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 FSTL4Q6MZW2 842 aa16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 PKN3Q6P5Z2 889 aa16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 PAQR9Q6ZVX9 377 aa16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 FUKQ8N0W3 1084 aa16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 FAM160A2Q8N612 972 aaPredicted RBP16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 TAS1R2Q8TE23 839 aa16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 ATP2A3Q93084 1043 aa16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 DMAP1Q9NPF5 467 aaPredicted RBP16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 FAM49BQ9NUQ9 324 aa16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 SMPD4Q9NXE4 827 aa16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 CPQQ9Y646 472 aa16.68■□□□□ 0.26
CCDC88B-205ENST00000472524 LEFTY2O00292 366 aa16.67■□□□□ 0.26
CCDC88B-205ENST00000472524 TRDMT1O14717 391 aaKnown RBP16.67■□□□□ 0.26
CCDC88B-205ENST00000472524 LRP3O75074 770 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms