RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 IFNKQ9P0W0 207 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 EPS15L1Q9UBC2 864 aa12.63□□□□□ -0.39
VPS13D-204ENST00000469054 XPO1O14980 1071 aaKnown RBP12.62□□□□□ -0.39
VPS13D-204ENST00000469054 THAP12O43422 761 aa12.62□□□□□ -0.39
VPS13D-204ENST00000469054 SETSIPP0DME0 302 aa12.62□□□□□ -0.39
VPS13D-204ENST00000469054 SSTR3P32745 418 aaPredicted RBP12.62□□□□□ -0.39
VPS13D-204ENST00000469054 JAM2P57087 298 aa12.62□□□□□ -0.39
VPS13D-204ENST00000469054 IFRD2Q12894 506 aaPredicted RBP12.62□□□□□ -0.39
VPS13D-204ENST00000469054 TAF10Q12962 218 aa12.62□□□□□ -0.39
VPS13D-204ENST00000469054 SLC47A2Q86VL8 602 aa12.62□□□□□ -0.39
VPS13D-204ENST00000469054 GAS2L3Q86XJ1 694 aa12.62□□□□□ -0.39
VPS13D-204ENST00000469054 SCAMP5Q8TAC9 235 aa12.62□□□□□ -0.39
VPS13D-204ENST00000469054 SLC35F5Q8WV83 523 aa12.62□□□□□ -0.39
VPS13D-204ENST00000469054 FBXO32Q969P5 355 aa12.62□□□□□ -0.39
VPS13D-204ENST00000469054 SLITRK1Q96PX8 696 aa12.62□□□□□ -0.39
VPS13D-204ENST00000469054 FBXO44Q9H4M3 255 aa12.62□□□□□ -0.39
VPS13D-204ENST00000469054 LIMD1Q9UGP4 676 aa12.62□□□□□ -0.39
VPS13D-204ENST00000469054 FAM92AA1XBS5 289 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 SOBPA7XYQ1 873 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 M0QYV0 167 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 TULP2O00295 520 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 TADA3O75528 432 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 TPM3P06753 285 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 CYP11B1P15538 503 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 DDX6P26196 483 aaKnown RBP eCLIP12.61□□□□□ -0.39
VPS13D-204ENST00000469054 SOX5P35711 763 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 PBX1P40424 430 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 STAT1P42224 750 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 PLA2G4AP47712 749 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 PPP3CCP48454 512 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 KIF11P52732 1056 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 CYP4F8P98187 520 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 MEA1Q16626 185 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 ARHGAP15Q53QZ3 475 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 STXBP5Q5T5C0 1151 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 GPR158Q5T848 1215 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 GPRIN1Q7Z2K8 1008 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 CACNA2D4Q7Z3S7 1137 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 MRPS31Q92665 395 aaKnown RBP12.61□□□□□ -0.39
VPS13D-204ENST00000469054 SECISBP2LQ93073 1101 aaKnown RBP12.61□□□□□ -0.39
VPS13D-204ENST00000469054 ZSWIM3Q96MP5 696 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 XPO4Q9C0E2 1151 aaKnown RBP12.61□□□□□ -0.39
VPS13D-204ENST00000469054 RBSNQ9H1K0 784 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 TASP1Q9H6P5 420 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 CD320Q9NPF0 282 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 TRPM5Q9NZQ8 1165 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 ZMYM5Q9UJ78 669 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 USP3Q9Y6I4 520 aa12.61□□□□□ -0.39
VPS13D-204ENST00000469054 ZNF840PA6NDX5 716 aa12.6□□□□□ -0.39
VPS13D-204ENST00000469054 CBFA2T2O43439 604 aa12.6□□□□□ -0.39
VPS13D-204ENST00000469054 GFPT2O94808 682 aa12.6□□□□□ -0.39
VPS13D-204ENST00000469054 GPD2P43304 727 aa12.6□□□□□ -0.39
VPS13D-204ENST00000469054 RAB41Q5JT25 222 aa12.6□□□□□ -0.39
VPS13D-204ENST00000469054 DENND1BQ6P3S1 775 aa12.6□□□□□ -0.39
VPS13D-204ENST00000469054 MON1AQ86VX9 555 aa12.6□□□□□ -0.39
VPS13D-204ENST00000469054 MAB21L3Q8N8X9 362 aa12.6□□□□□ -0.39
VPS13D-204ENST00000469054 PDZD8Q8NEN9 1154 aa12.6□□□□□ -0.39
VPS13D-204ENST00000469054 ZSCAN18Q8TBC5 510 aaPredicted RBP12.6□□□□□ -0.39
VPS13D-204ENST00000469054 KCTD13Q8WZ19 329 aa12.6□□□□□ -0.39
VPS13D-204ENST00000469054 OVCA2Q8WZ82 227 aa12.6□□□□□ -0.39
VPS13D-204ENST00000469054 HSFY1Q96LI6 401 aa12.6□□□□□ -0.39
VPS13D-204ENST00000469054 NUP58Q9BVL2 599 aa12.6□□□□□ -0.39
VPS13D-204ENST00000469054 SLC46A2Q9BY10 475 aa12.6□□□□□ -0.39
VPS13D-204ENST00000469054 SLITRK6Q9H5Y7 841 aa12.6□□□□□ -0.39
VPS13D-204ENST00000469054 LRRC4Q9HBW1 653 aa12.6□□□□□ -0.39
VPS13D-204ENST00000469054 CHORDC1Q9UHD1 332 aaPredicted RBP12.6□□□□□ -0.39
VPS13D-204ENST00000469054 MYO6Q9UM54 1294 aa12.6□□□□□ -0.39
VPS13D-204ENST00000469054 PCDHGC3Q9UN70 934 aa12.6□□□□□ -0.39
VPS13D-204ENST00000469054 SCML2Q9UQR0 700 aa12.6□□□□□ -0.39
VPS13D-204ENST00000469054 NCANO14594 1321 aa12.6□□□□□ -0.39
VPS13D-204ENST00000469054 ANHXE9PGG2 379 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 CFHP08603 1231 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 ZDHHC11BP0C7U3 371 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 KRT9P35527 623 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 PDE6CP51160 858 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 TKTL1P51854 596 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 PLCB2Q00722 1185 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 FIGNQ5HY92 759 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 FAM78AQ5JUQ0 283 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 SNX30Q5VWJ9 437 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 TXNDC8Q6A555 127 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 PMF1Q6P1K2 205 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 SARM1Q6SZW1 724 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 PARM1Q6UWI2 310 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 RNF135Q8IUD6 432 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 SMARCD2Q92925 531 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 NXPE3Q969Y0 559 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 ASB16Q96NS5 453 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 EDEM3Q9BZQ6 932 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 TTYH3Q9C0H2 523 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 LHX5Q9H2C1 402 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 KCNK12Q9HB15 430 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 GMIPQ9P107 970 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 IGSF9Q9P2J2 1179 aa12.59□□□□□ -0.39
VPS13D-204ENST00000469054 C2orf78A6NCI8 922 aa12.58□□□□□ -0.4
VPS13D-204ENST00000469054 ABL1P00519 1130 aa12.58□□□□□ -0.4
VPS13D-204ENST00000469054 ASGR2P07307 311 aa12.58□□□□□ -0.4
VPS13D-204ENST00000469054 CCDC172P0C7W6 258 aa12.58□□□□□ -0.4
VPS13D-204ENST00000469054 PFKLP17858 780 aa12.58□□□□□ -0.4
VPS13D-204ENST00000469054 WEE1P30291 646 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms