RNA–Protein interactions for RNA: ENST00000467663.5

CTNS-205, Transcript of cystinosin, lysosomal cystine transporter, human

TSL 3

Gene CTNS, Length 590 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNS-205	ENST00000467663	DLGAP2	Q9P1A6	1054 aa		12.8	□□□□□ -0.36
CTNS-205	ENST00000467663	L1RE1	Q9UN81	338 aa		12.8	□□□□□ -0.36
CTNS-205	ENST00000467663	SIT1	Q9Y3P8	196 aa		12.8	□□□□□ -0.36
CTNS-205	ENST00000467663	TSC2	P49815	1807 aa		12.8	□□□□□ -0.36
CTNS-205	ENST00000467663	ATP8B3	O60423	1300 aa		12.8	□□□□□ -0.36
CTNS-205	ENST00000467663	PTPRJ	Q12913	1337 aa		12.8	□□□□□ -0.36
CTNS-205	ENST00000467663	EIF3CL	B5ME19	914 aa	Known RBP	12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	TULP1	O00294	542 aa	Predicted RBP	12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	HUS1	O60921	280 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	SOAT2	O75908	522 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	FGF19	O95750	216 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	CCDC175	P0C221	793 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	GJA1	P17302	382 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	ATF6	P18850	670 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	CUL2	Q13617	745 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	TEAD2	Q15562	447 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	MLF2	Q15773	248 aa	Predicted RBP	12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	ZNF699	Q32M78	642 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	ZNF667	Q5HYK9	610 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	PPP1R2P3	Q6NXS1	205 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	ZNF662	Q6ZS27	426 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	LIMS2	Q7Z4I7	341 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	IRF2BP2	Q7Z5L9	587 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	ITIH5	Q86UX2	942 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	ZNF677	Q86XU0	584 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	FAM71A	Q8IYT1	594 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	DCP1B	Q8IZD4	617 aa	Known RBP	12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	TMEM86A	Q8N2M4	240 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	TOP6BL	Q8N6T0	577 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	PJA1	Q8NG27	643 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	DNASE1L2	Q92874	299 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	ZNF830	Q96NB3	372 aa	Predicted RBP	12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	EIF3C	Q99613	913 aa	Known RBP	12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	SEPT5	Q99719	369 aa	Predicted RBP	12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	ACBD6	Q9BR61	282 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	DEF6	Q9H4E7	631 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	FAM86C1	Q9NVL1	165 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	CNTN6	Q9UQ52	1028 aa		12.79	□□□□□ -0.36
CTNS-205	ENST00000467663	EPN1	Q9Y6I3	576 aa	Predicted RBP	12.79	□□□□□ -0.36
CTNS-205	ENST00000467663		A0A1W2PRU2	124 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	KANSL1L	A0AUZ9	987 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	PROB1	E7EW31	1015 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	GABRD	O14764	452 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	ZNF500	O60304	480 aa	Predicted RBP	12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	NDUFA10	O95299	355 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	LCA5L	O95447	670 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	CST3	P01034	146 aa	Predicted RBP	12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	KRT19	P08727	400 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	HAPLN1	P10915	354 aa	Predicted RBP	12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	PSMC3	P17980	439 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	NBL1	P41271	181 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	SPA17	Q15506	151 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	NFE2	Q16621	373 aa	Predicted RBP	12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	MGAT5B	Q3V5L5	792 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	TDRD12	Q587J7	1177 aa	Known RBP	12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	LMBRD2	Q68DH5	695 aa	Predicted RBP	12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	VIT	Q6UXI7	678 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	GAREM2	Q75VX8	874 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	DPH6	Q7L8W6	267 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	ARHGEF19	Q8IW93	802 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	DEPDC1B	Q8WUY9	529 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	E2F7	Q96AV8	911 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	PKMYT1	Q99640	499 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	TRMT61B	Q9BVS5	477 aa	Known RBP	12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	OSBPL6	Q9BZF3	934 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	FOXQ1	Q9C009	403 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	XYLT2	Q9H1B5	865 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	ZNF334	Q9HCZ1	680 aa	Predicted RBP	12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	TRPV5	Q9NQA5	729 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	TMLHE	Q9NVH6	421 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	DDX43	Q9NXZ2	648 aa	Known RBP	12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	PCDHB5	Q9Y5E4	795 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	SNX9	Q9Y5X1	595 aa		12.78	□□□□□ -0.36
CTNS-205	ENST00000467663	KIF2A	O00139	706 aa	Predicted RBP	12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	FOXN3	O00409	490 aa	Predicted RBP	12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	AKR1B10	O60218	316 aa		12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	DCN	P07585	359 aa	Known RBP	12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	VIPR2	P41587	438 aa		12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	LHX1	P48742	406 aa		12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	MYL6	P60660	151 aa		12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	TSPY1	Q01534	308 aa		12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	PTK2	Q05397	1052 aa		12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	GOLGA8F	Q08AF8	430 aa		12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	GOLGA8DP	Q0D2H9	430 aa		12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	GRM2	Q14416	872 aa		12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	VEPH1	Q14D04	833 aa		12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	ANGPT1	Q15389	498 aa		12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	ARHGAP44	Q17R89	818 aa		12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	SOWAHA	Q2M3V2	549 aa		12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	INTS6L	Q5JSJ4	861 aa	Known RBP	12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	HGSNAT	Q68CP4	663 aa		12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	OSTM1	Q86WC4	334 aa		12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	MFSD6L	Q8IWD5	586 aa		12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	HPDL	Q96IR7	371 aa		12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	KREMEN1	Q96MU8	473 aa		12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	NELL2	Q99435	816 aa		12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	CHP1	Q99653	195 aa		12.77	□□□□□ -0.37
CTNS-205	ENST00000467663	LPIN3	Q9BQK8	851 aa		12.77	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms