RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 NXF1Q9UBU9 619 aaKnown RBP21.96■■□□□ 1.11
COL6A1-203ENST00000466285 TM4SF5O14894 197 aa21.95■■□□□ 1.1
COL6A1-203ENST00000466285 TACC1O75410 805 aa21.95■■□□□ 1.1
COL6A1-203ENST00000466285 ZNF806P0C7X5 589 aa21.95■■□□□ 1.1
COL6A1-203ENST00000466285 PTPN1P18031 435 aaKnown RBP21.95■■□□□ 1.1
COL6A1-203ENST00000466285 GNL1P36915 607 aaPredicted RBP21.95■■□□□ 1.1
COL6A1-203ENST00000466285 AFMP43652 599 aa21.95■■□□□ 1.1
COL6A1-203ENST00000466285 SLC6A11P48066 632 aa21.95■■□□□ 1.1
COL6A1-203ENST00000466285 PGFP49763 221 aa21.95■■□□□ 1.1
COL6A1-203ENST00000466285 NOP14P78316 857 aaKnown RBP21.95■■□□□ 1.1
COL6A1-203ENST00000466285 ORC1Q13415 861 aa21.95■■□□□ 1.1
COL6A1-203ENST00000466285 BMT2Q1RMZ1 405 aa21.95■■□□□ 1.1
COL6A1-203ENST00000466285 WDR72Q3MJ13 1102 aa21.95■■□□□ 1.1
COL6A1-203ENST00000466285 C2orf27AQ580R0 203 aa21.95■■□□□ 1.1
COL6A1-203ENST00000466285 TDRD10Q5VZ19 366 aaKnown RBP21.95■■□□□ 1.1
COL6A1-203ENST00000466285 PAQR9Q6ZVX9 377 aa21.95■■□□□ 1.1
COL6A1-203ENST00000466285 FSIP1Q8NA03 581 aa21.95■■□□□ 1.1
COL6A1-203ENST00000466285 XXYLT1Q8NBI6 393 aa21.95■■□□□ 1.1
COL6A1-203ENST00000466285 ZC3H10Q96K80 434 aaKnown RBP21.95■■□□□ 1.1
COL6A1-203ENST00000466285 ZFRQ96KR1 1074 aaKnown RBP21.95■■□□□ 1.1
COL6A1-203ENST00000466285 C8orf48Q96LL4 319 aa21.95■■□□□ 1.1
COL6A1-203ENST00000466285 SNX25Q9H3E2 840 aa21.95■■□□□ 1.1
COL6A1-203ENST00000466285 CUEDC2Q9H467 287 aa21.95■■□□□ 1.1
COL6A1-203ENST00000466285 TRPM5Q9NZQ8 1165 aa21.95■■□□□ 1.1
COL6A1-203ENST00000466285 HMGXB4Q9UGU5 601 aa21.95■■□□□ 1.1
COL6A1-203ENST00000466285 UBE4BO95155 1302 aa21.95■■□□□ 1.1
COL6A1-203ENST00000466285 APBB3O95704 486 aa21.94■■□□□ 1.1
COL6A1-203ENST00000466285 ABL1P00519 1130 aa21.94■■□□□ 1.1
COL6A1-203ENST00000466285 ANXA13P27216 316 aa21.94■■□□□ 1.1
COL6A1-203ENST00000466285 SLC7A9P82251 487 aa21.94■■□□□ 1.1
COL6A1-203ENST00000466285 CCDC33Q8N5R6 958 aa21.94■■□□□ 1.1
COL6A1-203ENST00000466285 CAMKK1Q8N5S9 505 aa21.94■■□□□ 1.1
COL6A1-203ENST00000466285 B3GALNT2Q8NCR0 500 aa21.94■■□□□ 1.1
COL6A1-203ENST00000466285 KIAA0895Q8NCT3 520 aa21.94■■□□□ 1.1
COL6A1-203ENST00000466285 FNBP1Q96RU3 617 aa21.94■■□□□ 1.1
COL6A1-203ENST00000466285 KCNK16Q96T55 309 aa21.94■■□□□ 1.1
COL6A1-203ENST00000466285 CFAP97Q9P2B7 532 aa21.94■■□□□ 1.1
COL6A1-203ENST00000466285 PCDHA7Q9UN72 937 aa21.94■■□□□ 1.1
COL6A1-203ENST00000466285 PLXND1Q9Y4D7 1925 aa21.94■■□□□ 1.1
COL6A1-203ENST00000466285 LRRIQ3A6PVS8 624 aaPredicted RBP21.93■■□□□ 1.1
COL6A1-203ENST00000466285 TRIM66O15016 1216 aa21.93■■□□□ 1.1
COL6A1-203ENST00000466285 KLRC4O43908 158 aa21.93■■□□□ 1.1
COL6A1-203ENST00000466285 VNN1O95497 513 aa21.93■■□□□ 1.1
COL6A1-203ENST00000466285 NFATC1O95644 943 aa21.93■■□□□ 1.1
COL6A1-203ENST00000466285 TNNC1P63316 161 aa21.93■■□□□ 1.1
COL6A1-203ENST00000466285 DLG4P78352 724 aa21.93■■□□□ 1.1
COL6A1-203ENST00000466285 FBXO43Q4G163 708 aa21.93■■□□□ 1.1
COL6A1-203ENST00000466285 TMEM92Q6UXU6 159 aa21.93■■□□□ 1.1
COL6A1-203ENST00000466285 FAM35AQ86V20 835 aa21.93■■□□□ 1.1
COL6A1-203ENST00000466285 IQUBQ8NA54 791 aa21.93■■□□□ 1.1
COL6A1-203ENST00000466285 MDGA1Q8NFP4 955 aa21.93■■□□□ 1.1
COL6A1-203ENST00000466285 SCAMP5Q8TAC9 235 aa21.93■■□□□ 1.1
COL6A1-203ENST00000466285 MYO18AQ92614 2054 aaKnown RBP21.93■■□□□ 1.1
COL6A1-203ENST00000466285 LOXL4Q96JB6 756 aa21.93■■□□□ 1.1
COL6A1-203ENST00000466285 ZNF396Q96N95 335 aaPredicted RBP21.93■■□□□ 1.1
COL6A1-203ENST00000466285 KIAA1586Q9HCI6 787 aa21.93■■□□□ 1.1
COL6A1-203ENST00000466285 R3HCC1Q9Y3T6 440 aaKnown RBP21.93■■□□□ 1.1
COL6A1-203ENST00000466285 A8MXQ7 604 aa21.92■■□□□ 1.1
COL6A1-203ENST00000466285 AKAP3O75969 853 aa21.92■■□□□ 1.1
COL6A1-203ENST00000466285 AMPD2Q01433 879 aa21.92■■□□□ 1.1
COL6A1-203ENST00000466285 KDSRQ06136 332 aa21.92■■□□□ 1.1
COL6A1-203ENST00000466285 MAPRE1Q15691 268 aaKnown RBP21.92■■□□□ 1.1
COL6A1-203ENST00000466285 STPG1Q5TH74 334 aa21.92■■□□□ 1.1
COL6A1-203ENST00000466285 EMC10Q5UCC4 262 aa21.92■■□□□ 1.1
COL6A1-203ENST00000466285 RESP18Q5W5W9 173 aa21.92■■□□□ 1.1
COL6A1-203ENST00000466285 ANO7Q6IWH7 933 aa21.92■■□□□ 1.1
COL6A1-203ENST00000466285 FRMD1Q8N878 549 aa21.92■■□□□ 1.1
COL6A1-203ENST00000466285 C12orf50Q8NA57 414 aaPredicted RBP21.92■■□□□ 1.1
COL6A1-203ENST00000466285 ACDQ96AP0 544 aa21.92■■□□□ 1.1
COL6A1-203ENST00000466285 COCHO43405 550 aa21.91■■□□□ 1.1
COL6A1-203ENST00000466285 STAU1O95793 577 aaKnown RBP21.91■■□□□ 1.1
COL6A1-203ENST00000466285 F13A1P00488 732 aa21.91■■□□□ 1.1
COL6A1-203ENST00000466285 DGKEP52429 567 aa21.91■■□□□ 1.1
COL6A1-203ENST00000466285 LIMK1P53667 647 aa21.91■■□□□ 1.1
COL6A1-203ENST00000466285 DHCR24Q15392 516 aa21.91■■□□□ 1.1
COL6A1-203ENST00000466285 RHBDF2Q6PJF5 856 aa21.91■■□□□ 1.1
COL6A1-203ENST00000466285 C12orf56Q8IXR9 622 aa21.91■■□□□ 1.1
COL6A1-203ENST00000466285 PHTF2Q8N3S3 785 aa21.91■■□□□ 1.1
COL6A1-203ENST00000466285 ALLCQ8N6M5 410 aa21.91■■□□□ 1.1
COL6A1-203ENST00000466285 TSTD1Q8NFU3 115 aa21.91■■□□□ 1.1
COL6A1-203ENST00000466285 LRRC27Q9C0I9 530 aa21.91■■□□□ 1.1
COL6A1-203ENST00000466285 ELOVL4Q9GZR5 314 aa21.91■■□□□ 1.1
COL6A1-203ENST00000466285 CCSER2Q9H7U1 834 aa21.91■■□□□ 1.1
COL6A1-203ENST00000466285 EBF1Q9UH73 591 aa21.91■■□□□ 1.1
COL6A1-203ENST00000466285 SERTAD1Q9UHV2 236 aa21.91■■□□□ 1.1
COL6A1-203ENST00000466285 PATE3B3GLJ2 98 aa21.9■■□□□ 1.1
COL6A1-203ENST00000466285 TNFRSF10BO14763 440 aa21.9■■□□□ 1.1
COL6A1-203ENST00000466285 ACTN4O43707 911 aaKnown RBP21.9■■□□□ 1.1
COL6A1-203ENST00000466285 BEST1O76090 585 aa21.9■■□□□ 1.1
COL6A1-203ENST00000466285 ZSCAN22P10073 491 aaPredicted RBP21.9■■□□□ 1.1
COL6A1-203ENST00000466285 MBL2P11226 248 aaPredicted RBP21.9■■□□□ 1.1
COL6A1-203ENST00000466285 CCDC130P13994 396 aa21.9■■□□□ 1.1
COL6A1-203ENST00000466285 CREB5Q02930 508 aa21.9■■□□□ 1.1
COL6A1-203ENST00000466285 STK4Q13043 487 aa21.9■■□□□ 1.1
COL6A1-203ENST00000466285 KNOP1Q1ED39 458 aaKnown RBP21.9■■□□□ 1.1
COL6A1-203ENST00000466285 N4BP2L1Q5TBK1 243 aaPredicted RBP21.9■■□□□ 1.1
COL6A1-203ENST00000466285 RASSF3Q86WH2 238 aa21.9■■□□□ 1.1
COL6A1-203ENST00000466285 ZMIZ2Q8NF64 920 aa21.9■■□□□ 1.1
COL6A1-203ENST00000466285 GMIPQ9P107 970 aa21.9■■□□□ 1.1
COL6A1-203ENST00000466285 MMP17Q9ULZ9 603 aa21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms