RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	TRIM49C	P0CI26	452 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	ARSA	P15289	507 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	PTPN1	P18031	435 aa	Known RBP	9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	NR2F2	P24468	414 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	DDX6	P26196	483 aa	Known RBP eCLIP	9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	ATIC	P31939	592 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	MAGEA11	P43364	429 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	RPS9	P46781	194 aa	Known RBP	9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	CACNA2D1	P54289	1103 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	SATB1	Q01826	763 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	PNOC	Q13519	176 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	LRRC32	Q14392	662 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	KCNB1	Q14721	858 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	ITPRIPL2	Q3MIP1	535 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	WDR44	Q5JSH3	913 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	SPOPL	Q6IQ16	392 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	CC2D1A	Q6P1N0	951 aa	Predicted RBP	9.24	□□□□□ -0.93
RFX3-209	ENST00000451859		Q6ZS52	159 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	DENND5B	Q6ZUT9	1274 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	LIMS2	Q7Z4I7	341 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	MON1A	Q86VX9	555 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	SMYD4	Q8IYR2	804 aa	Predicted RBP	9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	ARL14EP	Q8N8R7	260 aa	Predicted RBP	9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	B3GALNT2	Q8NCR0	500 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	MYCBPAP	Q8TBZ2	947 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	TRMT2B	Q96GJ1	504 aa	Known RBP	9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	SDCBP2	Q9H190	292 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	CHRD	Q9H2X0	955 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	C8orf33	Q9H7E9	229 aa	Predicted RBP	9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	TDP1	Q9NUW8	608 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	TMEM30A	Q9NV96	361 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	DMAC2	Q9NW81	257 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	OBP2A	Q9NY56	170 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	ZMYM5	Q9UJ78	669 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	FBXO4	Q9UKT5	387 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	FRMD4B	Q9Y2L6	1034 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	WNT6	Q9Y6F9	365 aa		9.24	□□□□□ -0.93
RFX3-209	ENST00000451859	CEP192	Q8TEP8	1941 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	THADA	Q6YHU6	1953 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	FAM237A	A0A1B0GTK4	181 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	GOLGA6L4	A6NEF3	574 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	TRIM66	O15016	1216 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	TACC1	O75410	805 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	RHOBTB3	O94955	611 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	KIF20A	O95235	890 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	HLA-DRA	P01903	254 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	C4BPA	P04003	597 aa	Known RBP	9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	USP17L7	P0C7H9	530 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	CHRNB1	P11230	501 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	IFNAR2	P48551	515 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	PLCB2	Q00722	1185 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	RUNX3	Q13761	415 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	GAS6	Q14393	721 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	MTF1	Q14872	753 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	LPAL2	Q16609	132 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	HEATR6	Q6AI08	1181 aa	Known RBP	9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	VSTM1	Q6UX27	236 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	RALGPS2	Q86X27	583 aa	Predicted RBP	9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	SLC9A9	Q8IVB4	645 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	DCLK2	Q8N568	766 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	ATRIP	Q8WXE1	791 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	ERCC4	Q92889	916 aa	Predicted RBP	9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	EEF2KMT	Q96G04	330 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	MYRFL	Q96LU7	910 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	B3GNT5	Q9BYG0	378 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	ELOVL4	Q9GZR5	314 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	KIF9	Q9HAQ2	790 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	HPS4	Q9NQG7	708 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	SMPD4	Q9NXE4	827 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	TRPM5	Q9NZQ8	1165 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	HMGXB4	Q9UGU5	601 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	GPR179	Q6PRD1	2367 aa		9.23	□□□□□ -0.93
RFX3-209	ENST00000451859	NUP205	Q92621	2012 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	OTOL1	A6NHN0	477 aa	Predicted RBP	9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	WIPF1	O43516	503 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	AKAP3	O75969	853 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	STAU1	O95793	577 aa	Known RBP	9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	KRT13	P13646	458 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	CCDC130	P13994	396 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	HDC	P19113	662 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	WEE1	P30291	646 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	HOXC13	P31276	330 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	GCLM	P48507	274 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	VAMP7	P51809	220 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	AP3M2	P53677	418 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	FAM160A1	Q05DH4	1040 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	TAF10	Q12962	218 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	ZNF77	Q15935	545 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	SGSM1	Q2NKQ1	1148 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	ZNF528	Q3MIS6	628 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	ZACN	Q401N2	412 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	C1orf220	Q5T0J3	134 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	LCE2C	Q5TA81	110 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	NAIF1	Q69YI7	327 aa	Predicted RBP	9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	PRR23B	Q6ZRT6	265 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	SV2A	Q7L0J3	742 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	ACOT1	Q86TX2	421 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	FAM35A	Q86V20	835 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	FAM186B	Q8IYM0	893 aa		9.22	□□□□□ -0.93
RFX3-209	ENST00000451859	KIAA2013	Q8IYS2	634 aa		9.22	□□□□□ -0.93

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