RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 OTUB2Q96DC9 234 aa14.15□□□□□ -0.14
HMGB3-204ENST00000448905 SPACA7Q96KW9 195 aa14.15□□□□□ -0.14
HMGB3-204ENST00000448905 CNOT6LQ96LI5 555 aaKnown RBP14.15□□□□□ -0.14
HMGB3-204ENST00000448905 TRIM9Q9C026 710 aa14.15□□□□□ -0.14
HMGB3-204ENST00000448905 AGPAT3Q9NRZ7 376 aa14.15□□□□□ -0.14
HMGB3-204ENST00000448905 CFAP97Q9P2B7 532 aa14.15□□□□□ -0.14
HMGB3-204ENST00000448905 NXF1Q9UBU9 619 aaKnown RBP14.15□□□□□ -0.14
HMGB3-204ENST00000448905 CIZ1Q9ULV3 898 aaPredicted RBP14.15□□□□□ -0.14
HMGB3-204ENST00000448905 ANK1P16157 1881 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 A0A0A0MRY4 1105 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 E2F8A0AVK6 867 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 STX6O43752 255 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 CLSTN1O94985 981 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 KAT7O95251 611 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 MBL2P11226 248 aaPredicted RBP14.14□□□□□ -0.15
HMGB3-204ENST00000448905 TRIM21P19474 475 aaKnown RBP14.14□□□□□ -0.15
HMGB3-204ENST00000448905 OPRD1P41143 372 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 DPP6P42658 865 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 CYP2J2P51589 502 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 AP3M2P53677 418 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 USP46P62068 366 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 GAD2Q05329 585 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 CCDC142Q17RM4 750 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 FAM26FQ5R3K3 315 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 PMS2CLQ68D20 193 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 PSAPL1Q6NUJ1 521 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 CNNM4Q6P4Q7 775 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 CYP2U1Q7Z449 544 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 RASSF3Q86WH2 238 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 PGBD3Q8N328 593 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 KCNV2Q8TDN2 545 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 OVCA2Q8WZ82 227 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 HPS3Q969F9 1004 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 DHX58Q96C10 678 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 FAM84AQ96KN4 292 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 TNIP3Q96KP6 325 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 CGRRF1Q99675 332 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 C7orf25Q9BPX7 421 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 MRPL45Q9BRJ2 306 aaKnown RBP14.14□□□□□ -0.15
HMGB3-204ENST00000448905 TPSD1Q9BZJ3 242 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 MAGEF1Q9HAY2 307 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 TMEM9BQ9NQ34 198 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 SMPD4Q9NXE4 827 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 BCCIPQ9P287 314 aaKnown RBP eCLIP14.14□□□□□ -0.15
HMGB3-204ENST00000448905 TFIP11Q9UBB9 837 aaKnown RBP14.14□□□□□ -0.15
HMGB3-204ENST00000448905 MTMR6Q9Y217 621 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 MYH11P35749 1972 aa14.14□□□□□ -0.15
HMGB3-204ENST00000448905 ATG2BQ96BY7 2078 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 CACNA1BQ00975 2339 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 TBC1D3BA6NDS4 549 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 CLIC2O15247 247 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 CUTAO60888 179 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 STAU1O95793 577 aaKnown RBP14.13□□□□□ -0.15
HMGB3-204ENST00000448905 OAS1P00973 400 aaKnown RBP14.13□□□□□ -0.15
HMGB3-204ENST00000448905 CYP17A1P05093 508 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 P4HA1P13674 534 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 DHPSP49366 369 aaPredicted RBP14.13□□□□□ -0.15
HMGB3-204ENST00000448905 NOVA1P51513 510 aaKnown RBP14.13□□□□□ -0.15
HMGB3-204ENST00000448905 ZXDBP98169 803 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 CYP24A1Q07973 514 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 IFRD2Q12894 506 aaPredicted RBP14.13□□□□□ -0.15
HMGB3-204ENST00000448905 LMAN2Q12907 356 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 SPDYCQ5MJ68 293 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 HECTD3Q5T447 861 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 TCEAL6Q6IPX3 200 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 RHBDF2Q6PJF5 856 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 EPM2AIP1Q7L775 607 aaPredicted RBP14.13□□□□□ -0.15
HMGB3-204ENST00000448905 TRMT11Q7Z4G4 463 aaKnown RBP14.13□□□□□ -0.15
HMGB3-204ENST00000448905 B3GALNT2Q8NCR0 500 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 GOLGA5Q8TBA6 731 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 WHAMMQ8TF30 809 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 PIGKQ92643 395 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 TCEAL3Q969E4 200 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 FBXO32Q969P5 355 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 MED10Q9BTT4 135 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 NUSAP1Q9BXS6 441 aaKnown RBP14.13□□□□□ -0.15
HMGB3-204ENST00000448905 NACA2Q9H009 215 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 ARHGEF4Q9NR80 690 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 COMMD8Q9NX08 183 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 CHORDC1Q9UHD1 332 aaPredicted RBP14.13□□□□□ -0.15
HMGB3-204ENST00000448905 SH3BP1Q9Y3L3 701 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 PTPRJQ12913 1337 aa14.13□□□□□ -0.15
HMGB3-204ENST00000448905 PVALEFA0A1B0GWK0 134 aa14.12□□□□□ -0.15
HMGB3-204ENST00000448905 TGFB1I1O43294 461 aa14.12□□□□□ -0.15
HMGB3-204ENST00000448905 EXOC3O60645 756 aa14.12□□□□□ -0.15
HMGB3-204ENST00000448905 KLF8O95600 359 aaPredicted RBP14.12□□□□□ -0.15
HMGB3-204ENST00000448905 OLFM2O95897 454 aa14.12□□□□□ -0.15
HMGB3-204ENST00000448905 ADH5P11766 374 aa14.12□□□□□ -0.15
HMGB3-204ENST00000448905 CEACAM1P13688 526 aa14.12□□□□□ -0.15
HMGB3-204ENST00000448905 HOXD13P35453 343 aa14.12□□□□□ -0.15
HMGB3-204ENST00000448905 TIE1P35590 1138 aa14.12□□□□□ -0.15
HMGB3-204ENST00000448905 SLC6A11P48066 632 aa14.12□□□□□ -0.15
HMGB3-204ENST00000448905 MYL6P60660 151 aa14.12□□□□□ -0.15
HMGB3-204ENST00000448905 BIRC3Q13489 604 aa14.12□□□□□ -0.15
HMGB3-204ENST00000448905 SDE2Q6IQ49 451 aa14.12□□□□□ -0.15
HMGB3-204ENST00000448905 UNC13DQ70J99 1090 aa14.12□□□□□ -0.15
HMGB3-204ENST00000448905 NELFCDQ8IXH7 590 aa14.12□□□□□ -0.15
HMGB3-204ENST00000448905 ALLCQ8N6M5 410 aa14.12□□□□□ -0.15
HMGB3-204ENST00000448905 TXNDC5Q8NBS9 432 aaKnown RBP14.12□□□□□ -0.15
HMGB3-204ENST00000448905 GLIS3Q8NEA6 775 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms