RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 GTSE1Q9NYZ3 720 aa13.51□□□□□ -0.25
PRPF40A-203ENST00000448428 CHORDC1Q9UHD1 332 aaPredicted RBP13.51□□□□□ -0.25
PRPF40A-203ENST00000448428 PIAS3Q9Y6X2 628 aa13.51□□□□□ -0.25
PRPF40A-203ENST00000448428 WDFY4Q6ZS81 3184 aa13.51□□□□□ -0.25
PRPF40A-203ENST00000448428 PATJQ8NI35 1801 aa13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 MUC6Q6W4X9 2439 aa13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 PMM2O15305 246 aa13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 ABL1P00519 1130 aa13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 CKMP06732 381 aa13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 TRIM21P19474 475 aaKnown RBP13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 SOX9P48436 509 aa13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 KPNA1P52294 538 aaPredicted RBP13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 RAD23BP54727 409 aa13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 PLCB2Q00722 1185 aa13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 LRMPQ12912 555 aa13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 TTC39CQ8N584 583 aa13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 SLC4A11Q8NBS3 891 aa13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 FAM3CQ92520 227 aa13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 CLDN23Q96B33 292 aa13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 HEXIM2Q96MH2 286 aaKnown RBP13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 SLITRK1Q96PX8 696 aa13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 PHOX2BQ99453 314 aa13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 RNF38Q9H0F5 515 aa13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 IRF2BPLQ9H1B7 796 aa13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 C8orf33Q9H7E9 229 aaPredicted RBP13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 RWDD2AQ9UIY3 292 aa13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 NDRG2Q9UN36 371 aaKnown RBP13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 MRPS17Q9Y2R5 130 aaKnown RBP13.5□□□□□ -0.25
PRPF40A-203ENST00000448428 HHLA1C9JL84 531 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 GNA14O95837 355 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 FAM200BP0CF97 657 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 PFKLP17858 780 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 SLC5A3P53794 718 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 MARSP56192 900 aaKnown RBP13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 ZXDBP98169 803 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 KCNH2Q12809 1159 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 CUL2Q13617 745 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 ANGPT1Q15389 498 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 ZNF77Q15935 545 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 PPP1R26Q5T8A7 1209 aaPredicted RBP13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 TRIM68Q6AZZ1 485 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 CC2D1AQ6P1N0 951 aaPredicted RBP13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 CLEC20AQ6ZU45 233 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 TRIM59Q8IWR1 403 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 MLKLQ8NB16 471 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 TTC16Q8NEE8 873 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 LMO3Q8TAP4 145 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 SH3RF2Q8TEC5 729 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 ATOH1Q92858 354 aaPredicted RBP13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 FBXO32Q969P5 355 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 TMEM176AQ96HP8 235 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 IPO9Q96P70 1041 aaKnown RBP13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 DNAI2Q9GZS0 605 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 FAM124BQ9H5Z6 455 aaPredicted RBP13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 HPS4Q9NQG7 708 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 FAM86C1Q9NVL1 165 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 COMMD8Q9NX08 183 aa13.49□□□□□ -0.25
PRPF40A-203ENST00000448428 CACNA1IQ9P0X4 2223 aa13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 FAM92AA1XBS5 289 aa13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 OTOL1A6NHN0 477 aaPredicted RBP13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 SPECC1L-ADORA2AF8WAN1 911 aa13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 NCAM2O15394 837 aa13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 FGFR1OPO95684 399 aaKnown RBP13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 OLFM2O95897 454 aa13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 OAS1P00973 400 aaKnown RBP13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 CTHP32929 405 aa13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 PGFP49763 221 aa13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 PDE6CP51160 858 aa13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 RUNX3Q13761 415 aa13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 ITPRIPL2Q3MIP1 535 aa13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 SNX30Q5VWJ9 437 aa13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 GPRIN1Q7Z2K8 1008 aa13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 RALGPS2Q86X27 583 aaPredicted RBP13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 C1orf210Q8IVY1 113 aa13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 EHBP1Q8NDI1 1231 aa13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 PDZD8Q8NEN9 1154 aa13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 OVCA2Q8WZ82 227 aa13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 DUSP16Q9BY84 665 aa13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 EBF3Q9H4W6 596 aa13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 ARHGAP26Q9UNA1 814 aa13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 F5P12259 2224 aa13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 MYO16Q9Y6X6 1858 aa13.48□□□□□ -0.25
PRPF40A-203ENST00000448428 P4HA2O15460 535 aa13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 ZDHHC11BP0C7U3 371 aa13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 CCDC192P0DO97 292 aa13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 ARSAP15289 507 aa13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 TCF3P15923 654 aa13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 RPS9P46781 194 aaKnown RBP13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 SLC7A9P82251 487 aa13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 USP4Q13107 963 aa13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 MTF1Q14872 753 aa13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 TXNDC11Q6PKC3 985 aa13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 IRF2BP1Q8IU81 584 aa13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 UBR7Q8N806 425 aa13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 OSCP1Q8WVF1 389 aa13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 JAKMIP2Q96AA8 810 aa13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 MSANTD3Q96H12 275 aa13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 NT5C1BQ96P26 610 aa13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 GBP4Q96PP9 640 aa13.47□□□□□ -0.25
PRPF40A-203ENST00000448428 NUP62CLQ9H1M0 184 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms