RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 HS3ST4Q9Y661 456 aa6.88□□□□□ -1.31
USP54-206ENST00000433394 PNMA6EA0A0J9YXQ4 647 aa6.87□□□□□ -1.31
USP54-206ENST00000433394 EFCAB8A8MWE9 144 aa6.87□□□□□ -1.31
USP54-206ENST00000433394 EIF3FO00303 357 aaPredicted RBP6.87□□□□□ -1.31
USP54-206ENST00000433394 CDKL5O76039 1030 aa6.87□□□□□ -1.31
USP54-206ENST00000433394 NTSR2O95665 410 aa6.87□□□□□ -1.31
USP54-206ENST00000433394 XBP1P17861 261 aa6.87□□□□□ -1.31
USP54-206ENST00000433394 ACRV1P26436 265 aa6.87□□□□□ -1.31
USP54-206ENST00000433394 RBL1P28749 1068 aa6.87□□□□□ -1.31
USP54-206ENST00000433394 AARSP49588 968 aaKnown RBP eCLIP6.87□□□□□ -1.31
USP54-206ENST00000433394 SELENOPP49908 381 aa6.87□□□□□ -1.31
USP54-206ENST00000433394 TBX2Q13207 712 aaPredicted RBP6.87□□□□□ -1.31
USP54-206ENST00000433394 ATP1A4Q13733 1029 aa6.87□□□□□ -1.31
USP54-206ENST00000433394 CSHL1Q14406 222 aa6.87□□□□□ -1.31
USP54-206ENST00000433394 ZIK1Q3SY52 487 aaPredicted RBP6.87□□□□□ -1.31
USP54-206ENST00000433394 RINT1Q6NUQ1 792 aa6.87□□□□□ -1.31
USP54-206ENST00000433394 C2CD5Q86YS7 1000 aa6.87□□□□□ -1.31
USP54-206ENST00000433394 C1QL4Q86Z23 238 aa6.87□□□□□ -1.31
USP54-206ENST00000433394 SYNE4Q8N205 404 aa6.87□□□□□ -1.31
USP54-206ENST00000433394 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.87□□□□□ -1.31
USP54-206ENST00000433394 NGDNQ8NEJ9 315 aaKnown RBP6.87□□□□□ -1.31
USP54-206ENST00000433394 MBD3L2Q8NHZ7 208 aaPredicted RBP6.87□□□□□ -1.31
USP54-206ENST00000433394 OTUD7AQ8TE49 926 aaPredicted RBP6.87□□□□□ -1.31
USP54-206ENST00000433394 BRD8Q9H0E9 1235 aa6.87□□□□□ -1.31
USP54-206ENST00000433394 AKIP1Q9NQ31 210 aa6.87□□□□□ -1.31
USP54-206ENST00000433394 ADAMTS20P59510 1910 aa6.87□□□□□ -1.31
USP54-206ENST00000433394 IPO5O00410 1097 aaKnown RBP6.86□□□□□ -1.31
USP54-206ENST00000433394 NCAM2O15394 837 aa6.86□□□□□ -1.31
USP54-206ENST00000433394 ITGB3P05106 788 aa6.86□□□□□ -1.31
USP54-206ENST00000433394 VEGFAP15692 232 aaPredicted RBP6.86□□□□□ -1.31
USP54-206ENST00000433394 DDX6P26196 483 aaKnown RBP eCLIP6.86□□□□□ -1.31
USP54-206ENST00000433394 AKT1P31749 480 aa6.86□□□□□ -1.31
USP54-206ENST00000433394 VAV2P52735 878 aa6.86□□□□□ -1.31
USP54-206ENST00000433394 RPS6KA2Q15349 733 aa6.86□□□□□ -1.31
USP54-206ENST00000433394 FBXO47Q5MNV8 452 aa6.86□□□□□ -1.31
USP54-206ENST00000433394 DEPDC1Q5TB30 811 aa6.86□□□□□ -1.31
USP54-206ENST00000433394 JMJD6Q6NYC1 403 aaPredicted RBP6.86□□□□□ -1.31
USP54-206ENST00000433394 FTSJ3Q8IY81 847 aaKnown RBP6.86□□□□□ -1.31
USP54-206ENST00000433394 NAXEQ8NCW5 288 aa6.86□□□□□ -1.31
USP54-206ENST00000433394 TMEM171Q8WVE6 324 aa6.86□□□□□ -1.31
USP54-206ENST00000433394 LRIG1Q96JA1 1093 aa6.86□□□□□ -1.31
USP54-206ENST00000433394 CDK5RAP1Q96SZ6 601 aaKnown RBP6.86□□□□□ -1.31
USP54-206ENST00000433394 NUDT22Q9BRQ3 303 aa6.86□□□□□ -1.31
USP54-206ENST00000433394 ACTRT3Q9BYD9 372 aa6.86□□□□□ -1.31
USP54-206ENST00000433394 TAF1DQ9H5J8 278 aaPredicted RBP6.86□□□□□ -1.31
USP54-206ENST00000433394 EPS8L2Q9H6S3 715 aa6.86□□□□□ -1.31
USP54-206ENST00000433394 GLOD4Q9HC38 313 aa6.86□□□□□ -1.31
USP54-206ENST00000433394 TBCCD1Q9NVR7 557 aa6.86□□□□□ -1.31
USP54-206ENST00000433394 RRN3P2A6NIE6 340 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 DNPH1O43598 174 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 NCR1O76036 304 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 LAG3P18627 525 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 CST5P28325 142 aaPredicted RBP6.85□□□□□ -1.31
USP54-206ENST00000433394 ITIH3Q06033 890 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 SCAPQ12770 1279 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 RESTQ13127 1097 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 FZD5Q13467 585 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 CYP2A13Q16696 494 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 GEN1Q17RS7 908 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 SLC4A8Q2Y0W8 1093 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 P3H1Q32P28 736 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 PTCHD3Q3KNS1 767 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 Q6ZSN1 163 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 TMPRSS9Q7Z410 1059 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 SLC44A2Q8IWA5 706 aaPredicted RBP6.85□□□□□ -1.31
USP54-206ENST00000433394 OR6Y1Q8NGX8 325 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 STT3BQ8TCJ2 826 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 SPPL3Q8TCT6 385 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 THAP4Q8WY91 577 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 CPT1BQ92523 772 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 UNKLQ9H9P5 680 aaKnown RBP6.85□□□□□ -1.31
USP54-206ENST00000433394 TMEM74BQ9NUR3 256 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 STEAP1Q9UHE8 339 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 PNMA2Q9UL42 364 aa6.85□□□□□ -1.31
USP54-206ENST00000433394 J3KTA2 159 aa6.84□□□□□ -1.31
USP54-206ENST00000433394 MUSKO15146 869 aa6.84□□□□□ -1.31
USP54-206ENST00000433394 PRICKLE3O43900 615 aaPredicted RBP6.84□□□□□ -1.31
USP54-206ENST00000433394 NDUFA10O95299 355 aa6.84□□□□□ -1.31
USP54-206ENST00000433394 ANXA6P08133 673 aa6.84□□□□□ -1.31
USP54-206ENST00000433394 HGFP14210 728 aa6.84□□□□□ -1.31
USP54-206ENST00000433394 YY1P25490 414 aa6.84□□□□□ -1.31
USP54-206ENST00000433394 UQCRC1P31930 480 aa6.84□□□□□ -1.31
USP54-206ENST00000433394 CLCA4Q14CN2 919 aa6.84□□□□□ -1.31
USP54-206ENST00000433394 B3GNTL1Q67FW5 361 aaPredicted RBP6.84□□□□□ -1.31
USP54-206ENST00000433394 ABLIM2Q6H8Q1 611 aa6.84□□□□□ -1.31
USP54-206ENST00000433394 NFRKBQ6P4R8 1299 aa6.84□□□□□ -1.31
USP54-206ENST00000433394 CLEC9AQ6UXN8 241 aa6.84□□□□□ -1.31
USP54-206ENST00000433394 TMPRSS6Q8IU80 811 aa6.84□□□□□ -1.31
USP54-206ENST00000433394 IZUMO1Q8IYV9 350 aa6.84□□□□□ -1.31
USP54-206ENST00000433394 ABRAQ8N0Z2 381 aa6.84□□□□□ -1.31
USP54-206ENST00000433394 Q8NA96 180 aa6.84□□□□□ -1.31
USP54-206ENST00000433394 CPEB3Q8NE35 698 aaKnown RBP6.84□□□□□ -1.31
USP54-206ENST00000433394 AFG1LQ8WV93 481 aa6.84□□□□□ -1.31
USP54-206ENST00000433394 GOLGA1Q92805 767 aa6.84□□□□□ -1.31
USP54-206ENST00000433394 C3orf49Q96BT1 292 aa6.84□□□□□ -1.31
USP54-206ENST00000433394 VPS50Q96JG6 964 aa6.84□□□□□ -1.31
USP54-206ENST00000433394 TRAPPC9Q96Q05 1148 aa6.84□□□□□ -1.31
USP54-206ENST00000433394 TTPALQ9BTX7 342 aa6.84□□□□□ -1.31
USP54-206ENST00000433394 ELAC1Q9H777 363 aaKnown RBP6.84□□□□□ -1.31
USP54-206ENST00000433394 SAGE1Q9NXZ1 904 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms