RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 PAPOLBQ9NRJ5 636 aaKnown RBP11.5□□□□□ -0.57
LIMS1-207ENST00000422797 TAGLN3Q9UI15 199 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 PTPRJQ12913 1337 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 CLRN2A0PK11 232 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 GAS2O43903 313 aaKnown RBP11.5□□□□□ -0.57
LIMS1-207ENST00000422797 RNF8O76064 485 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 OATP04181 439 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 PDHA1P08559 390 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 CFHP08603 1231 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 FGFR1P11362 822 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 KRT3P12035 628 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 DESP17661 470 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 PEX19P40855 299 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 MAGEA6P43360 314 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 ACOT2P49753 483 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 CLCN2P51788 898 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 ACTR2P61160 394 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 IRX4P78413 519 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 DPYSL3Q14195 570 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 RCN2Q14257 317 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 DUOXA2Q1HG44 320 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 ATP13A4Q4VNC1 1196 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 ACSBG2Q5FVE4 666 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 LMBRD2Q68DH5 695 aaPredicted RBP11.5□□□□□ -0.57
LIMS1-207ENST00000422797 AGBL3Q8NEM8 1001 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 CMASQ8NFW8 434 aaPredicted RBP11.5□□□□□ -0.57
LIMS1-207ENST00000422797 RTP4Q96DX8 246 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 DTNBP1Q96EV8 351 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 NIFKQ9BYG3 293 aaKnown RBP11.5□□□□□ -0.57
LIMS1-207ENST00000422797 KCNK13Q9HB14 408 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 CISHQ9NSE2 258 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 RNF146Q9NTX7 359 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 ASNSD1Q9NWL6 643 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 TAS2R1Q9NYW7 299 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 SLC17A7Q9P2U7 560 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 TEX264Q9Y6I9 313 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 TCRBV9S1A1TA0A576 114 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 ZNF487B1APH4 448 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 SPATA31C2B4DYI2 1134 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 GOLGA8SH3BPF8 625 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 GOLGA8MH3BSY2 632 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 LRCH4O75427 683 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 TM7SF2O76062 418 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 MYL2P10916 166 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 KCNA3P22001 575 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 OGDHQ02218 1023 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 CNTN2Q02246 1040 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 WASHC5Q12768 1159 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 TRPC3Q13507 836 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 KCNJ11Q14654 390 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 NOMO1Q15155 1222 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 TMCO4Q5TGY1 634 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 ANKRD22Q5VYY1 191 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 OR52E8Q6IFG1 317 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 RFWD3Q6PCD5 774 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 DSTYKQ6XUX3 929 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 SH2D5Q6ZV89 423 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 LRRC6Q86X45 466 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 RFX6Q8HWS3 928 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 CRLF3Q8IUI8 442 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 MAP7D3Q8IWC1 876 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 SLC4A11Q8NBS3 891 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 KCTD6Q8NC69 237 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 SPDYE1Q8NFV5 336 aaPredicted RBP11.49□□□□□ -0.57
LIMS1-207ENST00000422797 PIP4K2CQ8TBX8 421 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 TTC17Q96AE7 1141 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 HAUS1Q96CS2 278 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 IFT43Q96FT9 208 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 OLFM3Q96PB7 478 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 FAM111AQ96PZ2 611 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 SRPK1Q96SB4 655 aaKnown RBP11.49□□□□□ -0.57
LIMS1-207ENST00000422797 MRPL4Q9BYD3 311 aaKnown RBP11.49□□□□□ -0.57
LIMS1-207ENST00000422797 GCOM2Q9BZD3 368 aaPredicted RBP11.49□□□□□ -0.57
LIMS1-207ENST00000422797 DLGAP2Q9P1A6 1054 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 SIRPGQ9P1W8 387 aa11.49□□□□□ -0.57
LIMS1-207ENST00000422797 ZNF541Q9H0D2 1346 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 WDR91A4D1P6 747 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 LRRIQ4A6NIV6 560 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 YDJCA8MPS7 323 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 CAPN14A8MX76 684 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 ADCY3O60266 1144 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 TOM1L1O75674 476 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 KRT36O76013 467 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 TMEM63AO94886 807 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 ATG7O95352 703 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 TNNC2P02585 160 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 RBP3P10745 1247 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 MYL4P12829 197 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 TCF4P15884 667 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 BGNP21810 368 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 TGM2P21980 687 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 PRKCHP24723 683 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 BRD2P25440 801 aaKnown RBP11.48□□□□□ -0.57
LIMS1-207ENST00000422797 ICAM3P32942 547 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 ELK3P41970 407 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 YWHAGP61981 247 aaKnown RBP eCLIP11.48□□□□□ -0.57
LIMS1-207ENST00000422797 BASP1P80723 227 aaKnown RBP11.48□□□□□ -0.57
LIMS1-207ENST00000422797 DSG1Q02413 1049 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 OVGP1Q12889 678 aa11.48□□□□□ -0.57
LIMS1-207ENST00000422797 NAB1Q13506 487 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms