RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 UBE2Q2Q8WVN8 375 aa18■□□□□ 0.47
CCDC28B-202ENST00000421922 GOLPH3Q9H4A6 298 aa18■□□□□ 0.47
CCDC28B-202ENST00000421922 CSNK1G1Q9HCP0 422 aa18■□□□□ 0.47
CCDC28B-202ENST00000421922 HYOU1Q9Y4L1 999 aa18■□□□□ 0.47
CCDC28B-202ENST00000421922 TMEM191CA6NGB0 347 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 F8VP50 259 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 PAPSS1O43252 624 aaPredicted RBP17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 LPXNO60711 386 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 PROSCO94903 275 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 EFEMP2O95967 443 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 RPL17P18621 184 aaKnown RBP17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 PSMA2P25787 234 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 OR1D2P34982 312 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 SCNN1AP37088 669 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 SLC1A1P43005 524 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 MAGEA11P43364 429 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 RABGGTBP53611 331 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 TUBB2AQ13885 445 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 EFHC1Q5JVL4 640 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 MEI1Q5TIA1 1274 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 OLFML1Q6UWY5 402 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 SLFN11Q7Z7L1 901 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 KLHL23Q8NBE8 558 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 FAM149B1Q96BN6 582 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 KCNK16Q96T55 309 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 SEPT5Q99719 369 aaPredicted RBP17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 TUBB2BQ9BVA1 445 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 PLVAPQ9BX97 442 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 ALG6Q9Y672 507 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 SAR1BQ9Y6B6 198 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 GBF1Q92538 1859 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 PLXNA4Q9HCM2 1894 aa17.99■□□□□ 0.47
CCDC28B-202ENST00000421922 MYO16Q9Y6X6 1858 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 TCRBV5S1A1TA0A578 114 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 LCHNA4D1U4 455 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 MTMR11A4FU01 709 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 MIF4GDA9UHW6 222 aaKnown RBP17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 NCK2O43639 380 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 TBC1D4O60343 1298 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 TCP1P17987 556 aaKnown RBP17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 GPD1P21695 349 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 COMTP21964 271 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 MAN1A1P33908 653 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 BMPR1AP36894 532 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 RPL34P49207 117 aaKnown RBP17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 CACNA2D1P54289 1103 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 RPL7AP62424 266 aaKnown RBP17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 ROR1Q01973 937 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 PIGHQ14442 188 aaPredicted RBP17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 SHHQ15465 462 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 MGAT5BQ3V5L5 792 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 PPP1R15BQ5SWA1 713 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 SLC8B1Q6J4K2 584 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 GPR65Q8IYL9 337 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 CNGB3Q9NQW8 809 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 ENTPD7Q9NQZ7 604 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 USTQ9Y2C2 406 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 LINC01553A4QN01 128 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 HSF2BPO75031 334 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 GRAP2O75791 330 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 RPL10AP62906 217 aaKnown RBP17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 MRPS5P82675 430 aaKnown RBP17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 RNF19BQ6ZMZ0 732 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 SLC26A9Q7LBE3 791 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 TMC7Q7Z402 723 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 NT5DC3Q86UY8 548 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 ATAD1Q8NBU5 361 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 ZMIZ2Q8NF64 920 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 JOSD2Q8TAC2 188 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 FNIP1Q8TF40 1166 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 C8orf48Q96LL4 319 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 SAMD11Q96NU1 681 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 C11orf84Q9BUA3 381 aaPredicted RBP17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 ULBP1Q9BZM6 244 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 TRIM7Q9C029 511 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 ZBP1Q9H171 429 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 ASNSD1Q9NWL6 643 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 SNX12Q9UMY4 172 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 PACSIN2Q9UNF0 486 aaPredicted RBP17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 LZTS1Q9Y250 596 aa17.98■□□□□ 0.47
CCDC28B-202ENST00000421922 COL6A3P12111 3177 aa17.97■□□□□ 0.47
CCDC28B-202ENST00000421922 WDR27A2RRH5 827 aa17.97■□□□□ 0.47
CCDC28B-202ENST00000421922 RNF8O76064 485 aa17.97■□□□□ 0.47
CCDC28B-202ENST00000421922 CTSAP10619 480 aa17.97■□□□□ 0.47
CCDC28B-202ENST00000421922 PDGFRAP16234 1089 aa17.97■□□□□ 0.47
CCDC28B-202ENST00000421922 SDC4P31431 198 aa17.97■□□□□ 0.47
CCDC28B-202ENST00000421922 ELF1P32519 619 aa17.97■□□□□ 0.47
CCDC28B-202ENST00000421922 RFC1P35251 1148 aaPredicted RBP17.97■□□□□ 0.47
CCDC28B-202ENST00000421922 NDUFV1P49821 464 aa17.97■□□□□ 0.47
CCDC28B-202ENST00000421922 ADCY1Q08828 1119 aa17.97■□□□□ 0.47
CCDC28B-202ENST00000421922 IFRD2Q12894 506 aaPredicted RBP17.97■□□□□ 0.47
CCDC28B-202ENST00000421922 SMC1AQ14683 1233 aaKnown RBP17.97■□□□□ 0.47
CCDC28B-202ENST00000421922 ODF2Q5BJF6 829 aa17.97■□□□□ 0.47
CCDC28B-202ENST00000421922 RAB41Q5JT25 222 aa17.97■□□□□ 0.47
CCDC28B-202ENST00000421922 PAPD7Q5XG87 772 aaKnown RBP17.97■□□□□ 0.47
CCDC28B-202ENST00000421922 TPGS2Q68CL5 300 aa17.97■□□□□ 0.47
CCDC28B-202ENST00000421922 RSPO2Q6UXX9 243 aaPredicted RBP17.97■□□□□ 0.47
CCDC28B-202ENST00000421922 EMC1Q8N766 993 aa17.97■□□□□ 0.47
CCDC28B-202ENST00000421922 TRIM62Q9BVG3 475 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms