RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 RAG1P15918 1043 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 ITGB5P18084 799 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 MAP4P27816 1152 aaKnown RBP12.43□□□□□ -0.42
PTPRF-205ENST00000414879 SSTR3P32745 418 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-205ENST00000414879 YWHAZP63104 245 aaKnown RBP12.43□□□□□ -0.42
PTPRF-205ENST00000414879 NSUN2Q08J23 767 aaKnown RBP eCLIP12.43□□□□□ -0.42
PTPRF-205ENST00000414879 CNGA2Q16280 664 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 SPATA20Q8TB22 786 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 RSPH1Q8WYR4 309 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 SNX19Q92543 992 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 TRIM51Q9BSJ1 452 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 PABPC3Q9H361 631 aaKnown RBP12.43□□□□□ -0.42
PTPRF-205ENST00000414879 KDM4CQ9H3R0 1056 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 GIT1Q9Y2X7 761 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 C2orf81A6NN90 581 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 DNAJC6O75061 913 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 CACNB2Q08289 660 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-205ENST00000414879 FAM43BQ6ZT52 329 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-205ENST00000414879 SETD3Q86TU7 594 aaPredicted RBP12.43□□□□□ -0.42
PTPRF-205ENST00000414879 NLRP14Q86W24 1093 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 GPATCH11Q8N954 259 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 NKX2-3Q8TAU0 364 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 CELF4Q9BZC1 486 aaKnown RBP12.43□□□□□ -0.42
PTPRF-205ENST00000414879 UBE2OQ9C0C9 1292 aaKnown RBP12.43□□□□□ -0.42
PTPRF-205ENST00000414879 L3MBTL1Q9Y468 752 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 YDJCA8MPS7 323 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 GYG2O15488 501 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 TLR2O60603 784 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 NDST1P52848 882 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 PABPC1LQ4VXU2 614 aaKnown RBP12.43□□□□□ -0.42
PTPRF-205ENST00000414879 SPDYCQ5MJ68 293 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 PDZD8Q8NEN9 1154 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 RXFP2Q8WXD0 754 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 PPWD1Q96BP3 646 aaKnown RBP12.43□□□□□ -0.42
PTPRF-205ENST00000414879 SYT17Q9BSW7 474 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 LRRC40Q9H9A6 602 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 PCDH9Q9HC56 1237 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 TBC1D13Q9NVG8 400 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 TRIM10Q9UDY6 481 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 TSPAN16Q9UKR8 245 aa12.43□□□□□ -0.42
PTPRF-205ENST00000414879 CNTNAP2Q9UHC6 1331 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 SDR42E2A6NKP2 422 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 MDH1P40925 334 aaKnown RBP12.42□□□□□ -0.42
PTPRF-205ENST00000414879 GRM5P41594 1212 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 TKTL1P51854 596 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 PMS1P54277 932 aaKnown RBP12.42□□□□□ -0.42
PTPRF-205ENST00000414879 IKBKEQ14164 716 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 ERMARDQ5T6L9 678 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 C3orf62Q6ZUJ4 267 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 SRPK1Q96SB4 655 aaKnown RBP12.42□□□□□ -0.42
PTPRF-205ENST00000414879 FAM167BQ9BTA0 163 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 SHOC2Q9UQ13 582 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 IPPQ9Y573 584 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 H0Y626 953 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 HOXB8P17481 243 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-205ENST00000414879 SLC47A2Q86VL8 602 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 PBXIP1Q96AQ6 731 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 GBP5Q96PP8 586 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 NIFKQ9BYG3 293 aaKnown RBP12.42□□□□□ -0.42
PTPRF-205ENST00000414879 KLHL11Q9NVR0 708 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 VAV3Q9UKW4 847 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 SIK3Q9Y2K2 1263 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 ARL2BPQ9Y2Y0 163 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 WTIPA6NIX2 430 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-205ENST00000414879 SMIM10L2AP0DMW4 78 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 SMIM10L2BP0DMW5 78 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 FGFR4P22455 802 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 ARHGDIAP52565 204 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 USP10Q14694 798 aaKnown RBP12.42□□□□□ -0.42
PTPRF-205ENST00000414879 SEZ6Q53EL9 994 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 MDH1BQ5I0G3 518 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 LRRC55Q6ZSA7 311 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 KCNK18Q7Z418 384 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 DDX53Q86TM3 631 aaKnown RBP12.42□□□□□ -0.42
PTPRF-205ENST00000414879 LRRC49Q8IUZ0 686 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 EXT2Q93063 718 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 BTBD6Q96KE9 485 aa12.42□□□□□ -0.42
PTPRF-205ENST00000414879 ACO2Q99798 780 aaKnown RBP12.42□□□□□ -0.42
PTPRF-205ENST00000414879 C5P01031 1676 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 TMEM88BA6NKF7 163 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 ATMINO43313 823 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-205ENST00000414879 GNRH1P01148 92 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 PLEKP08567 350 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-205ENST00000414879 SLC6A3Q01959 620 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 EFTUD2Q15029 972 aaKnown RBP eCLIP12.41□□□□□ -0.422e-6■■■■□ 21.5
PTPRF-205ENST00000414879 EPC2Q52LR7 807 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 SMYD5Q6GMV2 418 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 ABHD15Q6UXT9 468 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 MFN1Q8IWA4 741 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 C4orf32Q8N8J7 132 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 TMEM39AQ9NV64 488 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 SLC24A2Q9UI40 661 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 PCDHA3Q9Y5H8 950 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 HMBSP08397 361 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 PPARDQ03181 441 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 PTK7Q13308 1070 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 LRRC6Q86X45 466 aa12.41□□□□□ -0.42
PTPRF-205ENST00000414879 POP1Q99575 1024 aaKnown RBP12.41□□□□□ -0.42
PTPRF-205ENST00000414879 C20orf96Q9NUD7 363 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-205ENST00000414879 SLC25A13Q9UJS0 675 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms