RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 ATP6V1E1P36543 226 aa8.9□□□□□ -0.99
SYNE1-211ENST00000413186 FPGSQ05932 587 aa8.9□□□□□ -0.99
SYNE1-211ENST00000413186 ZNF211Q13398 564 aaPredicted RBP8.9□□□□□ -0.99
SYNE1-211ENST00000413186 SLC10A6Q3KNW5 377 aa8.9□□□□□ -0.99
SYNE1-211ENST00000413186 SLC39A12Q504Y0 691 aa8.9□□□□□ -0.99
SYNE1-211ENST00000413186 ECHDC2Q86YB7 292 aa8.9□□□□□ -0.99
SYNE1-211ENST00000413186 B3GALNT2Q8NCR0 500 aa8.9□□□□□ -0.99
SYNE1-211ENST00000413186 FBXL18Q96ME1 805 aa8.9□□□□□ -0.99
SYNE1-211ENST00000413186 WDR24Q96S15 920 aa8.9□□□□□ -0.99
SYNE1-211ENST00000413186 SPON2Q9BUD6 331 aa8.9□□□□□ -0.99
SYNE1-211ENST00000413186 ABCB6Q9NP58 842 aa8.9□□□□□ -0.99
SYNE1-211ENST00000413186 KIAA1551Q9HCM1 1747 aa8.9□□□□□ -0.99
SYNE1-211ENST00000413186 EEF2KO00418 725 aaKnown RBP8.89□□□□□ -0.99
SYNE1-211ENST00000413186 HSPA1AP0DMV8 641 aaKnown RBP8.89□□□□□ -0.99
SYNE1-211ENST00000413186 HSPA1BP0DMV9 641 aaKnown RBP8.89□□□□□ -0.99
SYNE1-211ENST00000413186 CYP2C18P33260 490 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 YWHAZP63104 245 aaKnown RBP8.89□□□□□ -0.99
SYNE1-211ENST00000413186 ROR1Q01973 937 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 ACAP1Q15027 740 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 ZSCAN26Q16670 478 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 NLRP9Q7RTR0 991 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 CHSY1Q86X52 802 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 IFNLR1Q8IU57 520 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-211ENST00000413186 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.89□□□□□ -0.99
SYNE1-211ENST00000413186 TBC1D31Q96DN5 1066 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 WDCPQ9H6R7 721 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 AP5Z1O43299 807 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 MTSS1O43312 755 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 ATMINO43313 823 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-211ENST00000413186 NCK2O43639 380 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 BUB1BO60566 1050 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-211ENST00000413186 PROSCO94903 275 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 CKBP12277 381 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 HNRNPH3P31942 346 aaKnown RBP8.89□□□□□ -0.99
SYNE1-211ENST00000413186 C2orf54Q08AI8 447 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 NNTQ13423 1086 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 DHX34Q14147 1143 aaKnown RBP8.89□□□□□ -0.99
SYNE1-211ENST00000413186 PDK2Q15119 407 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 PDCD2Q16342 344 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-211ENST00000413186 QSER1Q2KHR3 1735 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 ANO4Q32M45 955 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 NOP9Q86U38 636 aaKnown RBP8.89□□□□□ -0.99
SYNE1-211ENST00000413186 ANKRD52Q8NB46 1076 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 HNRNPLLQ8WVV9 542 aaKnown RBP8.89□□□□□ -0.99
SYNE1-211ENST00000413186 PPP1R2P1Q96PQ5 205 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 TTPALQ9BTX7 342 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 TRIM7Q9C029 511 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 CCDC68Q9H2F9 335 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 COL4A5P29400 1685 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 CPP00450 1065 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 CKMP06732 381 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 NPR3P17342 541 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 ADSSP30520 456 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 PSMD5Q16401 504 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 SYDE1Q6ZW31 735 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-211ENST00000413186 C1orf127Q8N9H9 656 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 SPPL2BQ8TCT7 592 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 TBCBQ99426 244 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 OSBPL8Q9BZF1 889 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 PLEKHA4Q9H4M7 779 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 COQ4Q9Y3A0 265 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 ARL5CA6NH57 179 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 SYN3O14994 580 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 FAM163BP0C2L3 166 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 PLTPP55058 493 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 YWHAGP61981 247 aaKnown RBP eCLIP8.89□□□□□ -0.99
SYNE1-211ENST00000413186 TRIM32Q13049 653 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 FYB2Q5VWT5 728 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 PDZD8Q8NEN9 1154 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 KAT5Q92993 513 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 ZFP42Q96MM3 310 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 IKZF4Q9H2S9 585 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 FLRT1Q9NZU1 646 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 STYXL1Q9Y6J8 313 aa8.89□□□□□ -0.99
SYNE1-211ENST00000413186 F8W8V4 182 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 DDX3XO00571 662 aaKnown RBP eCLIP8.88□□□□□ -0.99
SYNE1-211ENST00000413186 SRGAP2O75044 1071 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 ATP1A1P05023 1023 aaKnown RBP8.88□□□□□ -0.99
SYNE1-211ENST00000413186 HMBSP08397 361 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 INPP1P49441 399 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 PSEN1P49768 467 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 PPM1LQ5SGD2 360 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 C11orf63Q6NUN7 778 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 ATL2Q8NHH9 583 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 ZIC5Q96T25 663 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 TUBGCP4Q9UGJ1 667 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 PACSIN2Q9UNF0 486 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-211ENST00000413186 ADGRA3Q8IWK6 1321 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 KRT15P19012 456 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 GLUD2P49448 558 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 ZNF135P52742 658 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-211ENST00000413186 PDK1Q15118 436 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 SMYD5Q6GMV2 418 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 CENPUQ71F23 418 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 OTOP2Q7RTS6 562 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 SDCCAG8Q86SQ7 713 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-211ENST00000413186 UNC45BQ8IWX7 931 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 C3orf20Q8ND61 904 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 RXFP2Q8WXD0 754 aa8.88□□□□□ -0.99
SYNE1-211ENST00000413186 FRMD8P1Q9BZ68 369 aaPredicted RBP8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms