RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 IL31Q6EBC2 164 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 FOXR2Q6PJQ5 311 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 PDCD7Q8N8D1 485 aaKnown RBP11.64□□□□□ -0.55
PTPRF-204ENST00000412568 GBP7Q8N8V2 638 aaPredicted RBP11.64□□□□□ -0.55
PTPRF-204ENST00000412568 ETNK1Q9HBU6 452 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 WDR70Q9NW82 654 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 LCMT1Q9UIC8 334 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 TNFSF13BQ9Y275 285 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 AHDC1Q5TGY3 1603 aaPredicted RBP11.64□□□□□ -0.55
PTPRF-204ENST00000412568 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.64□□□□□ -0.55
PTPRF-204ENST00000412568 UBA6A0AVT1 1052 aaPredicted RBP11.64□□□□□ -0.55
PTPRF-204ENST00000412568 GPR25O00155 361 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 KCNK1O00180 336 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 SCAMP3O14828 347 aaKnown RBP11.64□□□□□ -0.55
PTPRF-204ENST00000412568 ENDOD1O94919 500 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 FLT3LGP49771 235 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 MAMLD1Q13495 774 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 PLPPR4Q7Z2D5 763 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 CPNE8Q86YQ8 564 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 NUDCD3Q8IVD9 361 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 EXD1Q8NHP7 514 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 ALKBH8Q96BT7 664 aaKnown RBP11.64□□□□□ -0.55
PTPRF-204ENST00000412568 LRRC37BQ96QE4 947 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 FAM167BQ9BTA0 163 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 TRIM55Q9BYV6 548 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 DHX33Q9H6R0 707 aaKnown RBP11.64□□□□□ -0.55
PTPRF-204ENST00000412568 PCMTD2Q9NV79 361 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 ARHGAP28Q9P2N2 729 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 PRRG1O14668 218 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 FANCGO15287 622 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 HSPA4LO95757 839 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 ESRRAP11474 423 aaPredicted RBP11.64□□□□□ -0.55
PTPRF-204ENST00000412568 KCNA3P22001 575 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 FECHP22830 423 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 CORO7P57737 925 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 MMEL1Q495T6 779 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 RFX8Q6ZV50 586 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 SPATA21Q7Z572 469 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 ZFP42Q96MM3 310 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 SYT15Q9BQS2 421 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 MTG1Q9BT17 334 aaPredicted RBP11.64□□□□□ -0.55
PTPRF-204ENST00000412568 ZNF518BQ9C0D4 1074 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 YIPF3Q9GZM5 350 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 CYP3A43Q9HB55 503 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 ITGA11Q9UKX5 1188 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 ADGRA3Q8IWK6 1321 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 TREHO43280 583 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 SERPINB6P35237 376 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 CENPCQ03188 943 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 MAP7Q14244 749 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 TTMPQ5BVD1 217 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 HABP4Q5JVS0 413 aaKnown RBP11.64□□□□□ -0.55
PTPRF-204ENST00000412568 RGMBQ6NW40 437 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 LRRC34Q8IZ02 419 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 KCNV2Q8TDN2 545 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 NOP53Q9NZM5 478 aaKnown RBP11.64□□□□□ -0.55
PTPRF-204ENST00000412568 PCDHA2Q9Y5H9 948 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 CDY2AQ9Y6F7 541 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 KIF3CO14782 793 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 AMPD1P23109 780 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 CASP2P42575 452 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 DNAJC3Q13217 504 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 ZNF235Q14590 738 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 TMCO4Q5TGY1 634 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 RASSF3Q86WH2 238 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 TRIM42Q8IWZ5 723 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 CD302Q8IX05 232 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 FBXO36Q8NEA4 188 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 VPS39Q96JC1 886 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 MFSD14AQ96MC6 490 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 NUF2Q9BZD4 464 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 ROPN1BQ9BZX4 212 aaPredicted RBP11.63□□□□□ -0.55
PTPRF-204ENST00000412568 ROPN1Q9HAT0 212 aaPredicted RBP11.63□□□□□ -0.55
PTPRF-204ENST00000412568 PAK5Q9P286 719 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 PCDHB7Q9Y5E2 793 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 RASSF10A6NK89 507 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 CASQ2O14958 399 aaPredicted RBP11.63□□□□□ -0.55
PTPRF-204ENST00000412568 LSM8O95777 96 aaKnown RBP11.63□□□□□ -0.55
PTPRF-204ENST00000412568 ODC1P11926 461 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 BDNFP23560 247 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 HOXD13P35453 343 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 NSUN2Q08J23 767 aaKnown RBP eCLIP11.63□□□□□ -0.55
PTPRF-204ENST00000412568 PTK7Q13308 1070 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 CHSY1Q86X52 802 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 TMEM192Q8IY95 271 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 DEFB106AQ8N104 65 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 ATPAF2Q8N5M1 289 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 FAM136AQ96C01 138 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 B3GNT5Q9BYG0 378 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 NRCAMQ92823 1304 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 CFAP69A5D8W1 941 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 CLDN5O00501 218 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 CES2O00748 559 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 ASS1P00966 412 aaKnown RBP11.63□□□□□ -0.55
PTPRF-204ENST00000412568 ATICP31939 592 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 TAS2R40P59535 323 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 IFI35P80217 286 aaPredicted RBP11.63□□□□□ -0.55
PTPRF-204ENST00000412568 SLFN11Q7Z7L1 901 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 CRLF3Q8IUI8 442 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 PRELID2Q8N945 189 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms