RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 IL37Q9NZH6 218 aa20.23■□□□□ 0.83
SF3A1-202ENST00000411423 F5P12259 2224 aa20.23■□□□□ 0.83
SF3A1-202ENST00000411423 CACNA1IQ9P0X4 2223 aa20.23■□□□□ 0.83
SF3A1-202ENST00000411423 HELZP42694 1942 aaKnown RBP20.23■□□□□ 0.83
SF3A1-202ENST00000411423 OLFM2O95897 454 aa20.22■□□□□ 0.83
SF3A1-202ENST00000411423 OAS1P00973 400 aaKnown RBP20.22■□□□□ 0.83
SF3A1-202ENST00000411423 USP17L7P0C7H9 530 aa20.22■□□□□ 0.83
SF3A1-202ENST00000411423 HDCP19113 662 aa20.22■□□□□ 0.83
SF3A1-202ENST00000411423 ADORA2BP29275 332 aa20.22■□□□□ 0.83
SF3A1-202ENST00000411423 MTAPQ13126 283 aa20.22■□□□□ 0.83
SF3A1-202ENST00000411423 MTF1Q14872 753 aa20.22■□□□□ 0.83
SF3A1-202ENST00000411423 TCERG1LQ5VWI1 586 aa20.22■□□□□ 0.83
SF3A1-202ENST00000411423 FBXL13Q8NEE6 735 aa20.22■□□□□ 0.83
SF3A1-202ENST00000411423 TTC16Q8NEE8 873 aa20.22■□□□□ 0.83
SF3A1-202ENST00000411423 SH3RF2Q8TEC5 729 aa20.22■□□□□ 0.83
SF3A1-202ENST00000411423 NELFBQ8WX92 580 aa20.22■□□□□ 0.83
SF3A1-202ENST00000411423 IMPG2Q9BZV3 1241 aa20.22■□□□□ 0.83
SF3A1-202ENST00000411423 C8orf33Q9H7E9 229 aaPredicted RBP20.22■□□□□ 0.83
SF3A1-202ENST00000411423 DMAP1Q9NPF5 467 aaPredicted RBP20.22■□□□□ 0.83
SF3A1-202ENST00000411423 TRPM5Q9NZQ8 1165 aa20.22■□□□□ 0.83
SF3A1-202ENST00000411423 CTNND2Q9UQB3 1225 aa20.22■□□□□ 0.83
SF3A1-202ENST00000411423 MRPS17Q9Y2R5 130 aaKnown RBP20.22■□□□□ 0.83
SF3A1-202ENST00000411423 COQ4Q9Y3A0 265 aa20.22■□□□□ 0.83
SF3A1-202ENST00000411423 WNT6Q9Y6F9 365 aa20.22■□□□□ 0.83
SF3A1-202ENST00000411423 R4GN57 208 aa20.22■□□□□ 0.83
SF3A1-202ENST00000411423 HHLA1C9JL84 531 aa20.21■□□□□ 0.83
SF3A1-202ENST00000411423 PSMA7O14818 248 aa20.21■□□□□ 0.83
SF3A1-202ENST00000411423 HOXC13P31276 330 aa20.21■□□□□ 0.83
SF3A1-202ENST00000411423 STX17P56962 302 aa20.21■□□□□ 0.83
SF3A1-202ENST00000411423 MAP3K7CLP57077 242 aa20.21■□□□□ 0.83
SF3A1-202ENST00000411423 UBE2HP62256 183 aa20.21■□□□□ 0.83
SF3A1-202ENST00000411423 PLCB2Q00722 1185 aa20.21■□□□□ 0.83
SF3A1-202ENST00000411423 RUNX3Q13761 415 aa20.21■□□□□ 0.83
SF3A1-202ENST00000411423 PON2Q15165 354 aa20.21■□□□□ 0.83
SF3A1-202ENST00000411423 CAMK4Q16566 473 aa20.21■□□□□ 0.83
SF3A1-202ENST00000411423 ITPRIPL2Q3MIP1 535 aa20.21■□□□□ 0.83
SF3A1-202ENST00000411423 ZNF394Q53GI3 561 aa20.21■□□□□ 0.83
SF3A1-202ENST00000411423 TSSK4Q6SA08 328 aa20.21■□□□□ 0.83
SF3A1-202ENST00000411423 CHRDQ9H2X0 955 aa20.21■□□□□ 0.83
SF3A1-202ENST00000411423 THG1LQ9NWX6 298 aaKnown RBP20.21■□□□□ 0.83
SF3A1-202ENST00000411423 CHORDC1Q9UHD1 332 aaPredicted RBP20.21■□□□□ 0.83
SF3A1-202ENST00000411423 ARHGAP26Q9UNA1 814 aa20.21■□□□□ 0.83
SF3A1-202ENST00000411423 TCF3P15923 654 aa20.2■□□□□ 0.82
SF3A1-202ENST00000411423 YWHAQP27348 245 aa20.2■□□□□ 0.82
SF3A1-202ENST00000411423 Q6ZS52 159 aa20.2■□□□□ 0.82
SF3A1-202ENST00000411423 CLEC20AQ6ZU45 233 aa20.2■□□□□ 0.82
SF3A1-202ENST00000411423 FILIP1Q7Z7B0 1213 aa20.2■□□□□ 0.82
SF3A1-202ENST00000411423 RALGPS2Q86X27 583 aaPredicted RBP20.2■□□□□ 0.82
SF3A1-202ENST00000411423 FBXO32Q969P5 355 aa20.2■□□□□ 0.82
SF3A1-202ENST00000411423 CYFIP2Q96F07 1278 aa20.2■□□□□ 0.82
SF3A1-202ENST00000411423 MED15Q96RN5 788 aa20.2■□□□□ 0.82
SF3A1-202ENST00000411423 HNRNPABQ99729 332 aaKnown RBP20.2■□□□□ 0.82
SF3A1-202ENST00000411423 NT5C1AQ9BXI3 368 aa20.2■□□□□ 0.82
SF3A1-202ENST00000411423 GTPBP4Q9BZE4 634 aaKnown RBP20.2■□□□□ 0.82
SF3A1-202ENST00000411423 LINC00597Q9H2U6 94 aa20.2■□□□□ 0.82
SF3A1-202ENST00000411423 C2orf42Q9NWW7 574 aa20.2■□□□□ 0.82
SF3A1-202ENST00000411423 GMIPQ9P107 970 aa20.2■□□□□ 0.82
SF3A1-202ENST00000411423 ARMCX3Q9UH62 379 aaPredicted RBP20.2■□□□□ 0.82
SF3A1-202ENST00000411423 ATP8B3O60423 1300 aa20.2■□□□□ 0.82
SF3A1-202ENST00000411423 FAM92AA1XBS5 289 aa20.19■□□□□ 0.82
SF3A1-202ENST00000411423 LEFTY2O00292 366 aa20.19■□□□□ 0.82
SF3A1-202ENST00000411423 SCAMP3O14828 347 aaKnown RBP20.19■□□□□ 0.82
SF3A1-202ENST00000411423 NCAM2O15394 837 aa20.19■□□□□ 0.82
SF3A1-202ENST00000411423 ABL1P00519 1130 aa20.19■□□□□ 0.82
SF3A1-202ENST00000411423 ZDHHC11BP0C7U3 371 aa20.19■□□□□ 0.82
SF3A1-202ENST00000411423 TDGF1P13385 188 aa20.19■□□□□ 0.82
SF3A1-202ENST00000411423 MAGEA9P43362 315 aa20.19■□□□□ 0.82
SF3A1-202ENST00000411423 SLC7A9P82251 487 aa20.19■□□□□ 0.82
SF3A1-202ENST00000411423 STIM1Q13586 685 aa20.19■□□□□ 0.82
SF3A1-202ENST00000411423 EML3Q32P44 896 aa20.19■□□□□ 0.82
SF3A1-202ENST00000411423 PPP1R26Q5T8A7 1209 aaPredicted RBP20.19■□□□□ 0.82
SF3A1-202ENST00000411423 SLC4A11Q8NBS3 891 aa20.19■□□□□ 0.82
SF3A1-202ENST00000411423 OSCP1Q8WVF1 389 aa20.19■□□□□ 0.82
SF3A1-202ENST00000411423 MSANTD3Q96H12 275 aa20.19■□□□□ 0.82
SF3A1-202ENST00000411423 ZFRQ96KR1 1074 aaKnown RBP20.19■□□□□ 0.82
SF3A1-202ENST00000411423 CEP63Q96MT8 703 aa20.19■□□□□ 0.82
SF3A1-202ENST00000411423 FBRSL1Q9HCM7 1045 aaKnown RBP20.19■□□□□ 0.82
SF3A1-202ENST00000411423 PRMT8Q9NR22 394 aaPredicted RBP20.19■□□□□ 0.82
SF3A1-202ENST00000411423 CISHQ9NSE2 258 aa20.19■□□□□ 0.82
SF3A1-202ENST00000411423 SMPD4Q9NXE4 827 aa20.19■□□□□ 0.82
SF3A1-202ENST00000411423 CPQQ9Y646 472 aa20.19■□□□□ 0.82
SF3A1-202ENST00000411423 PRR23AA6NEV1 266 aa20.18■□□□□ 0.82
SF3A1-202ENST00000411423 LAMTOR5O43504 91 aa20.18■□□□□ 0.82
SF3A1-202ENST00000411423 STX10O60499 249 aa20.18■□□□□ 0.82
SF3A1-202ENST00000411423 GFRA3O60609 400 aa20.18■□□□□ 0.82
SF3A1-202ENST00000411423 RTN3O95197 1032 aaPredicted RBP20.18■□□□□ 0.82
SF3A1-202ENST00000411423 RAD23BP54727 409 aa20.18■□□□□ 0.82
SF3A1-202ENST00000411423 CSTF1Q05048 431 aaKnown RBP20.18■□□□□ 0.82
SF3A1-202ENST00000411423 CCINQ13939 588 aa20.18■□□□□ 0.82
SF3A1-202ENST00000411423 UBR7Q8N806 425 aa20.18■□□□□ 0.82
SF3A1-202ENST00000411423 WBP2Q969T9 261 aa20.18■□□□□ 0.82
SF3A1-202ENST00000411423 JAKMIP2Q96AA8 810 aa20.18■□□□□ 0.82
SF3A1-202ENST00000411423 SLITRK1Q96PX8 696 aa20.18■□□□□ 0.82
SF3A1-202ENST00000411423 CCSER2Q9H7U1 834 aa20.18■□□□□ 0.82
SF3A1-202ENST00000411423 DUS2Q9NX74 493 aaKnown RBP20.18■□□□□ 0.82
SF3A1-202ENST00000411423 EHD2Q9NZN4 543 aa20.18■□□□□ 0.82
SF3A1-202ENST00000411423 FANCMQ8IYD8 2048 aa20.17■□□□□ 0.82
SF3A1-202ENST00000411423 COCHO43405 550 aa20.17■□□□□ 0.82
SF3A1-202ENST00000411423 FAM200BP0CF97 657 aa20.17■□□□□ 0.82
SF3A1-202ENST00000411423 PPP3CCP48454 512 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms