RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 CFAP57Q96MR6 1250 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 ZNF558Q96NG5 402 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 HTATIP2Q9BUP3 242 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 TUBB2BQ9BVA1 445 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 KLHL11Q9NVR0 708 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 PCSK1NQ9UHG2 260 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 CDY1Q9Y6F8 540 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 SLC4A7Q9Y6M7 1214 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 SYNJ2BP-COX16A0A087WUM0 186 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 MIF4GDA9UHW6 222 aaKnown RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 DDX3YO15523 660 aaKnown RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 SOAT2O75908 522 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 GJB5O95377 273 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 FGGP02679 453 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 PRLRP16471 622 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 FGFR3P22607 806 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 TAS2R40P59535 323 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 TAP1Q03518 808 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 CKAP4Q07065 602 aaKnown RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 ZNF252P-AS1Q0IIN9 211 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 PIGHQ14442 188 aaPredicted RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 DDR2Q16832 855 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 C15orf59Q2T9L4 293 aaPredicted RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 USP41Q3LFD5 358 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 KCNT1Q5JUK3 1230 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 SH3PXD2AQ5TCZ1 1133 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 DCAF12L1Q5VU92 463 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 SCYL2Q6P3W7 929 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 RSPO2Q6UXX9 243 aaPredicted RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 ZMIZ2Q8NF64 920 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 SCAMP5Q8TAC9 235 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 SPATA18Q8TC71 538 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 GPR152Q8TDT2 470 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 RXFP2Q8WXD0 754 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 UBXN4Q92575 508 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 ZNF689Q96CS4 500 aaPredicted RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 SEPT5Q99719 369 aaPredicted RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 AP1M1Q9BXS5 423 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 ULBP1Q9BZM6 244 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 ZWILCHQ9H900 591 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 NGRNQ9NPE2 291 aaKnown RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 DMAP1Q9NPF5 467 aaPredicted RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 COX16Q9P0S2 106 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 MTUS1Q9ULD2 1270 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 SLC27A5Q9Y2P5 690 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 SBDSQ9Y3A5 250 aaKnown RBP eCLIP3.89□□□□□ -1.79
RTN4-208ENST00000404909 CCDC66A2RUB6 948 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 CAPN9O14815 690 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 TLL1O43897 1013 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 RNF8O76064 485 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 PYGMP11217 842 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 ATP2A2P16615 1042 aaKnown RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 GPD1P21695 349 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 SDC4P31431 198 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 OR1D2P34982 312 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 CTNNA1P35221 906 aaKnown RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 GPR15P49685 360 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 RWDD2BP57060 319 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 MRPS25P82663 173 aaKnown RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 C2orf54Q08AI8 447 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 SMC1AQ14683 1233 aaKnown RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 PSMD5Q16401 504 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 NFE2Q16621 373 aaPredicted RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 ERCC6LQ2NKX8 1250 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 MGAT5BQ3V5L5 792 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 ATP13A4Q4VNC1 1196 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 DCAF6Q58WW2 860 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 COL13A1Q5TAT6 717 aaPredicted RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 PSRC1Q6PGN9 363 aaPredicted RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 ANKS3Q6ZW76 656 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 ZDHHC17Q8IUH5 632 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 TTC9BQ8N6N2 239 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 AUTS2Q8WXX7 1259 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 CD101Q93033 1021 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 PBKQ96KB5 322 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 RNPC3Q96LT9 517 aaKnown RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 HINFPQ9BQA5 517 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 VN1R3Q9BXE9 311 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 ZCWPW1Q9H0M4 648 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 EPC1Q9H2F5 836 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 PLEKHA4Q9H4M7 779 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 OR6C75A6NL08 312 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 C2CD4BA6NLJ0 364 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 PI4K2BG5E9Z4 385 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 H7C4K7 107 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 PGRMC1O00264 195 aaKnown RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 ADAM12O43184 909 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 LRCH4O75427 683 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 ZBED1O96006 694 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 LAG3P18627 525 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 PEX5P50542 639 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 ZNF143P52747 638 aaPredicted RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 MRPS5P82675 430 aaKnown RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 ADCY1Q08828 1119 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 DUSP4Q13115 394 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 KCTD19Q17RG1 926 aaPredicted RBP3.89□□□□□ -1.79
RTN4-208ENST00000404909 LONRF2Q1L5Z9 754 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 RAB6CQ53S08 254 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 SEL1L2Q5TEA6 688 aa3.89□□□□□ -1.79
RTN4-208ENST00000404909 TXNRD3NBQ6F5E7 133 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms