RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 FBXO38Q6PIJ6 1188 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 MIGA2Q7L4E1 593 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 TTC7BQ86TV6 843 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 EID2BQ96D98 161 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 MAML3Q96JK9 1138 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 GPR63Q9BZJ6 419 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 C2orf40Q9H1Z8 148 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 RNPEPQ9H4A4 650 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 MMRN2Q9H8L6 949 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 MLXIPQ9HAP2 919 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 XAB2Q9HCS7 855 aaKnown RBP4.54□□□□□ -1.68
HMGB1-204ENST00000399489 NECTIN3Q9NQS3 549 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 TBK1Q9UHD2 729 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 RABL2BQ9UNT1 228 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 SCAF8Q9UPN6 1271 aaKnown RBP4.54□□□□□ -1.68
HMGB1-204ENST00000399489 CNPY2Q9Y2B0 182 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 SNX8Q9Y5X2 465 aa4.54□□□□□ -1.68
HMGB1-204ENST00000399489 ZFP37Q9Y6Q3 630 aaPredicted RBP4.54□□□□□ -1.68
HMGB1-204ENST00000399489 HMX3A6NHT5 357 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 CLCA1A8K7I4 914 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 H3BUI4 141 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 ACADMP11310 421 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 KCNA2P16389 499 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 CCT4P50991 539 aaKnown RBP4.53□□□□□ -1.68
HMGB1-204ENST00000399489 PDE6CP51160 858 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 PRKAA2P54646 552 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 HSD17B7P56937 341 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 RPS16P62249 146 aaKnown RBP4.53□□□□□ -1.68
HMGB1-204ENST00000399489 ATP2C1P98194 919 aaPredicted RBP4.53□□□□□ -1.68
HMGB1-204ENST00000399489 SLC12A1Q13621 1099 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 SPIDRQ14159 915 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 EIF4A2Q14240 407 aaKnown RBP4.53□□□□□ -1.68
HMGB1-204ENST00000399489 WTAPQ15007 396 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 C3orf38Q5JPI3 329 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 KRT40Q6A162 431 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 CATSPERGQ6ZRH7 1159 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 TMTC3Q6ZXV5 915 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 MCM10Q7L590 875 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 NME9Q86XW9 330 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 EPHX4Q8IUS5 362 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 CELF5Q8N6W0 485 aaKnown RBP4.53□□□□□ -1.68
HMGB1-204ENST00000399489 CEP70Q8NHQ1 597 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 STON2Q8WXE9 905 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 DPF2Q92785 391 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 JAKMIP2Q96AA8 810 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 MIEF2Q96C03 454 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 IWS1Q96ST2 819 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 PRRX2Q99811 253 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 MXD3Q9BW11 206 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 EIF2AQ9BY44 585 aaKnown RBP4.53□□□□□ -1.68
HMGB1-204ENST00000399489 OR10A4Q9H209 315 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 ACAD9Q9H845 621 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 CYP4F11Q9HBI6 524 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 TMEM8AQ9HCN3 771 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 SERHLQ9NQF3 203 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 LMBRD1Q9NUN5 540 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 DCAF16Q9NXF7 216 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 RPS6KA6Q9UK32 745 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 PCDHGB4Q9UN71 923 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 KNSTRNQ9Y448 316 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 NUMBLQ9Y6R0 609 aa4.53□□□□□ -1.68
HMGB1-204ENST00000399489 H0Y626 953 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 SPTLC2O15270 562 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 ERAL1O75616 437 aaKnown RBP4.52□□□□□ -1.69
HMGB1-204ENST00000399489 GJB3O75712 270 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 NDST3O95803 873 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 MT-ND3P03897 115 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 TPM2P07951 284 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 STMN1P16949 149 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 MLH1P40692 756 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 CD86P42081 329 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 PHKA1P46020 1223 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 UBXN1Q04323 297 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 CUL4BQ13620 913 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 CTXN3Q4LDR2 81 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 ARMC4Q5T2S8 1044 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 TIGD7Q6NT04 549 aaPredicted RBP4.52□□□□□ -1.69
HMGB1-204ENST00000399489 ZNF783Q6ZMS7 281 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 MRGPRGQ86SM5 289 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 PRPF39Q86UA1 669 aaKnown RBP4.52□□□□□ -1.69
HMGB1-204ENST00000399489 PHYKPLQ8IUZ5 450 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 RPAP2Q8IXW5 612 aaPredicted RBP4.52□□□□□ -1.69
HMGB1-204ENST00000399489 AVL9Q8NBF6 648 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 TOR1AIP2Q8NFQ8 470 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 LILRB1Q8NHL6 650 aaPredicted RBP4.52□□□□□ -1.69
HMGB1-204ENST00000399489 SUCLG2Q96I99 432 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 COG8Q96MW5 612 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 TWNKQ96RR1 684 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 PPP1R9BQ96SB3 815 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 EYA3Q99504 573 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 IKZF4Q9H2S9 585 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 CCDC177Q9NQR7 707 aaPredicted RBP4.52□□□□□ -1.69
HMGB1-204ENST00000399489 TRMT1Q9NXH9 659 aaKnown RBP4.52□□□□□ -1.69
HMGB1-204ENST00000399489 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.52□□□□□ -1.69
HMGB1-204ENST00000399489 EIF2B4Q9UI10 523 aaKnown RBP4.52□□□□□ -1.69
HMGB1-204ENST00000399489 SCOCQ9UIL1 159 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 RBM8AQ9Y5S9 174 aaKnown RBP4.52□□□□□ -1.69
HMGB1-204ENST00000399489 NACADO15069 1562 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 FLT1P17948 1338 aa4.52□□□□□ -1.69
HMGB1-204ENST00000399489 PASKQ96RG2 1323 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms