RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 PRMT3O60678 531 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 SKAP2O75563 359 aaPredicted RBP7.44□□□□□ -1.22
UPF2-203ENST00000397053 KRT34O76011 436 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 NFICP08651 508 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 NCF1P14598 390 aaPredicted RBP7.44□□□□□ -1.22
UPF2-203ENST00000397053 C16orf89Q6UX73 402 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 CCDC81Q6ZN84 652 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 C3orf62Q6ZUJ4 267 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 NEK10Q6ZWH5 1172 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 OLFM3Q96PB7 478 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 PSMC3IPQ9P2W1 217 aaPredicted RBP7.44□□□□□ -1.22
UPF2-203ENST00000397053 ROBO2Q9HCK4 1378 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 MYMKA6NI61 221 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 ACSL4O60488 711 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 TPST1O60507 370 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 ATP5BP06576 529 aaKnown RBP7.44□□□□□ -1.22
UPF2-203ENST00000397053 ITIH2P19823 946 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 FEN1P39748 380 aaKnown RBP7.44□□□□□ -1.22
UPF2-203ENST00000397053 RAD23BP54727 409 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 ATP2C1P98194 919 aaPredicted RBP7.44□□□□□ -1.22
UPF2-203ENST00000397053 PLD1Q13393 1074 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 FAM45BPQ6NSW5 357 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 KIAA1324Q6UXG2 1013 aaKnown RBP7.44□□□□□ -1.22
UPF2-203ENST00000397053 ILDR2Q71H61 639 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 NT5DC3Q86UY8 548 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 UNC45BQ8IWX7 931 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 RSPH1Q8WYR4 309 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 CMTM5Q96DZ9 223 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 MRPL9Q9BYD2 267 aaKnown RBP7.44□□□□□ -1.22
UPF2-203ENST00000397053 TRIM8Q9BZR9 551 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 PHACTR1Q9C0D0 580 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 CHORDC1Q9UHD1 332 aaPredicted RBP7.44□□□□□ -1.22
UPF2-203ENST00000397053 A0A088AWK7 358 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 MTA2O94776 668 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 KLHL2O95198 593 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 CD2BP2O95400 341 aaKnown RBP7.44□□□□□ -1.22
UPF2-203ENST00000397053 CPSF4O95639 269 aaKnown RBP7.44□□□□□ -1.22
UPF2-203ENST00000397053 ALBP02768 609 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 C4BPBP20851 252 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 ZNF10P21506 573 aaPredicted RBP7.44□□□□□ -1.22
UPF2-203ENST00000397053 CLCN6P51797 869 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 GUCY1A3Q02108 690 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 DNAL1Q4LDG9 190 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 FNDC3BQ53EP0 1204 aaKnown RBP7.44□□□□□ -1.22
UPF2-203ENST00000397053 OVOS1Q6IE37 1185 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 CAPRIN2Q6IMN6 1127 aaKnown RBP7.44□□□□□ -1.22
UPF2-203ENST00000397053 MB21D2Q8IYB1 491 aaPredicted RBP7.44□□□□□ -1.22
UPF2-203ENST00000397053 SRBD1Q8N5C6 995 aaKnown RBP7.44□□□□□ -1.22
UPF2-203ENST00000397053 CNDP1Q96KN2 507 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 CCSER1Q9C0I3 900 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 MTFR1LQ9H019 292 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 PALMDQ9NP74 551 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 XPNPEP3Q9NQH7 507 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 AASDHPPTQ9NRN7 309 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 SOHLH2Q9NX45 425 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 CTNNAL1Q9UBT7 734 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 TNFSF13BQ9Y275 285 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 PCDHB5Q9Y5E4 795 aa7.44□□□□□ -1.22
UPF2-203ENST00000397053 MAP1BP46821 2468 aaKnown RBP7.43□□□□□ -1.22
UPF2-203ENST00000397053 RGL2O15211 777 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 KRT33AO76009 404 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 GHRP10912 638 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 PSMC3P17980 439 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 DSG3P32926 999 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 HSPA9P38646 679 aaKnown RBP7.43□□□□□ -1.22
UPF2-203ENST00000397053 LHX1P48742 406 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 CYP24A1Q07973 514 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 NCF4Q15080 339 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 SF3B3Q15393 1217 aaKnown RBP7.43□□□□□ -1.22
UPF2-203ENST00000397053 LRRC36Q1X8D7 754 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 POTEAQ6S8J7 498 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 FBXO16Q8IX29 292 aaPredicted RBP7.43□□□□□ -1.22
UPF2-203ENST00000397053 ADGRF2Q8IZF7 708 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 ZNF333Q96JL9 665 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 CDK5RAP1Q96SZ6 601 aaKnown RBP7.43□□□□□ -1.22
UPF2-203ENST00000397053 KLF6Q99612 283 aaPredicted RBP7.43□□□□□ -1.22
UPF2-203ENST00000397053 CCT7Q99832 543 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 PI4K2AQ9BTU6 479 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 FRMD8Q9BZ67 464 aaPredicted RBP7.43□□□□□ -1.22
UPF2-203ENST00000397053 TRIT1Q9H3H1 467 aaKnown RBP7.43□□□□□ -1.22
UPF2-203ENST00000397053 RRAGCQ9HB90 399 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 ZFYVE1Q9HBF4 777 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 TLR8Q9NR97 1041 aaKnown RBP7.43□□□□□ -1.22
UPF2-203ENST00000397053 FBXO28Q9NVF7 368 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 SMARCAL1Q9NZC9 954 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 KIAA1257Q9ULG3 409 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 ATP7AQ04656 1500 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 PNPLA7Q6ZV29 1317 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 CASTOR2A6NHX0 329 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 H3BRB1 525 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 RBAK-RBAKDNI3L0D1 243 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 HS6ST1O60243 411 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 PLA2G6O60733 806 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 DGKIO75912 1065 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 UCHL3P15374 230 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 CYP11B2P19099 503 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 ATP12AP54707 1039 aa7.43□□□□□ -1.22
UPF2-203ENST00000397053 MARSP56192 900 aaKnown RBP7.43□□□□□ -1.22
UPF2-203ENST00000397053 TRIM28Q13263 835 aaKnown RBP7.43□□□□□ -1.22
UPF2-203ENST00000397053 ZC2HC1CQ53FD0 456 aaPredicted RBP7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms