RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.03□□□□□ -0.64
NEDD8-202ENST00000396828 SCN4BQ8IWT1 228 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 NELFCDQ8IXH7 590 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 ADGRF2Q8IZF7 708 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 GPD1LQ8N335 351 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 TOP6BLQ8N6T0 577 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 LRRC52Q8N7C0 313 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 CACTINQ8WUQ7 758 aaKnown RBP11.03□□□□□ -0.64
NEDD8-202ENST00000396828 SCFD1Q8WVM8 642 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 MRPS31Q92665 395 aaKnown RBP11.03□□□□□ -0.64
NEDD8-202ENST00000396828 ARRDC1-AS1Q9H2J1 176 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 TMEM206Q9H813 350 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 INTS13Q9NVM9 706 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 GCNT4Q9P109 453 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 ITGA11Q9UKX5 1188 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 NFE2L3Q9Y4A8 694 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 WNT6Q9Y6F9 365 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 MAP1BP46821 2468 aaKnown RBP11.03□□□□□ -0.64
NEDD8-202ENST00000396828 CNOT1A5YKK6 2376 aaKnown RBP11.03□□□□□ -0.64
NEDD8-202ENST00000396828 SPAG17Q6Q759 2223 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 CACNA1BQ00975 2339 aa11.02□□□□□ -0.64
NEDD8-202ENST00000396828 SPEGQ15772 3267 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 PTPRDP23468 1912 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 USP24Q9UPU5 2620 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 PDXKO00764 312 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 DCLK1O15075 740 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 LRP3O75074 770 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 KRT37O76014 449 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 LDHAP00338 332 aaKnown RBP11.02□□□□□ -0.65
NEDD8-202ENST00000396828 CST3P01034 146 aaPredicted RBP11.02□□□□□ -0.65
NEDD8-202ENST00000396828 PDGFRBP09619 1106 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 CDK11BP21127 795 aaKnown RBP11.02□□□□□ -0.65
NEDD8-202ENST00000396828 SDHBP21912 280 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 BDNFP23560 247 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 DDX6P26196 483 aaKnown RBP eCLIP11.02□□□□□ -0.651e-6■■■□□ 15.5
NEDD8-202ENST00000396828 CACNA2D1P54289 1103 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 RBP5P82980 135 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 MYL7Q01449 175 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 GRSF1Q12849 480 aaKnown RBP eCLIP11.02□□□□□ -0.65
NEDD8-202ENST00000396828 ZNF268Q14587 947 aaPredicted RBP11.02□□□□□ -0.65
NEDD8-202ENST00000396828 EML3Q32P44 896 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 CFAP221Q4G0U5 840 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 ANKRD40Q6AI12 368 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 FOXR2Q6PJQ5 311 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 CEP68Q76N32 757 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 HS2ST1Q7LGA3 356 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 SPATA2LQ8IUW3 424 aaPredicted RBP11.02□□□□□ -0.65
NEDD8-202ENST00000396828 FAM114A1Q8IWE2 563 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 TMEM86AQ8N2M4 240 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 ARL14EPQ8N8R7 260 aaPredicted RBP11.02□□□□□ -0.65
NEDD8-202ENST00000396828 ANKRD20A12PQ8NF67 263 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 GOLGA5Q8TBA6 731 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 OSCP1Q8WVF1 389 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 MYLPFQ96A32 169 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 TRMT2BQ96GJ1 504 aaKnown RBP11.02□□□□□ -0.65
NEDD8-202ENST00000396828 HPDLQ96IR7 371 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 HHIPQ96QV1 700 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 MRPL45Q9BRJ2 306 aaKnown RBP11.02□□□□□ -0.65
NEDD8-202ENST00000396828 ECT2Q9H8V3 914 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 ABCB6Q9NP58 842 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 TMEM30AQ9NV96 361 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 CGNQ9P2M7 1197 aaKnown RBP11.02□□□□□ -0.65
NEDD8-202ENST00000396828 CEP295Q9C0D2 2601 aa11.02□□□□□ -0.65
NEDD8-202ENST00000396828 TRIM49BA6NDI0 452 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 SCAMP3O14828 347 aaKnown RBP11.01□□□□□ -0.65
NEDD8-202ENST00000396828 TGFB1I1O43294 461 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 RPP40O75818 363 aaKnown RBP11.01□□□□□ -0.65
NEDD8-202ENST00000396828 CKMP06732 381 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 TMEM191BP0C7N4 346 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 RPL13P26373 211 aaKnown RBP11.01□□□□□ -0.65
NEDD8-202ENST00000396828 RAP1GAPP47736 663 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 LHX1P48742 406 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 SNRPFP62306 86 aaKnown RBP11.01□□□□□ -0.65
NEDD8-202ENST00000396828 RPL10AP62906 217 aaKnown RBP11.01□□□□□ -0.65
NEDD8-202ENST00000396828 USP4Q13107 963 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 NCAPHQ15003 741 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 GAB4Q2WGN9 574 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 EDRF1Q3B7T1 1238 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 PPM1JQ5JR12 505 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 TTI2Q6NXR4 508 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 CC2D1AQ6P1N0 951 aaPredicted RBP11.01□□□□□ -0.65
NEDD8-202ENST00000396828 SFTPA1Q8IWL2 248 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 RDH13Q8NBN7 331 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 RPLP0P6Q8NHW5 317 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 NETO1Q8TDF5 533 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 SH3RF2Q8TEC5 729 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 GAB3Q8WWW8 586 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 ZNF516Q92618 1163 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 ELMO3Q96BJ8 720 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 P2RY13Q9BPV8 354 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 SYT15Q9BQS2 421 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 RNF38Q9H0F5 515 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 THAP9Q9H5L6 903 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 KIF9Q9HAQ2 790 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 FANCLQ9NW38 375 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 DUS2Q9NX74 493 aaKnown RBP11.01□□□□□ -0.65
NEDD8-202ENST00000396828 HSPBP1Q9NZL4 362 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 MAGEC2Q9UBF1 373 aaPredicted RBP11.01□□□□□ -0.65
NEDD8-202ENST00000396828 ZMYM5Q9UJ78 669 aa11.01□□□□□ -0.65
NEDD8-202ENST00000396828 HELZP42694 1942 aaKnown RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms