RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 MARK2Q7KZI7 788 aaKnown RBP11.65□□□□□ -0.54
CUX1-204ENST00000393824 PLPPR4Q7Z2D5 763 aa11.65□□□□□ -0.54
CUX1-204ENST00000393824 BBOF1Q8ND07 529 aa11.65□□□□□ -0.54
CUX1-204ENST00000393824 LMO3Q8TAP4 145 aa11.65□□□□□ -0.54
CUX1-204ENST00000393824 DTX3LQ8TDB6 740 aa11.65□□□□□ -0.54
CUX1-204ENST00000393824 GRK7Q8WTQ7 553 aa11.65□□□□□ -0.54
CUX1-204ENST00000393824 ZNF75CPQ92670 426 aaPredicted RBP11.65□□□□□ -0.54
CUX1-204ENST00000393824 MCUR1Q96AQ8 359 aa11.65□□□□□ -0.54
CUX1-204ENST00000393824 TTC25Q96NG3 672 aa11.65□□□□□ -0.54
CUX1-204ENST00000393824 TRABDQ9H4I3 376 aa11.65□□□□□ -0.54
CUX1-204ENST00000393824 ARL8BQ9NVJ2 186 aa11.65□□□□□ -0.54
CUX1-204ENST00000393824 TAS2R1Q9NYW7 299 aa11.65□□□□□ -0.54
CUX1-204ENST00000393824 KANSL3Q9P2N6 904 aa11.65□□□□□ -0.54
CUX1-204ENST00000393824 ANGPTL2Q9UKU9 493 aa11.65□□□□□ -0.54
CUX1-204ENST00000393824 ZNF510Q9Y2H8 683 aa11.65□□□□□ -0.54
CUX1-204ENST00000393824 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.65□□□□□ -0.54
CUX1-204ENST00000393824 PTCH2Q9Y6C5 1203 aa11.65□□□□□ -0.54
CUX1-204ENST00000393824 ARID2Q68CP9 1835 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 H3BRB1 525 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 FOXN3O00409 490 aaPredicted RBP11.64□□□□□ -0.55
CUX1-204ENST00000393824 PMM2O15305 246 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 ATP6V1G1O75348 118 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 HAUS5O94927 633 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 GAS8O95995 478 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 CCDC166P0CW27 439 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 TROVE2P10155 538 aaKnown RBP eCLIP11.64□□□□□ -0.553e-6■■□□□ 11.8
CUX1-204ENST00000393824 INSRRP14616 1297 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 GCAP28676 217 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 MAGEA10P43363 369 aaPredicted RBP11.64□□□□□ -0.55
CUX1-204ENST00000393824 NEK3P51956 506 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 PEX3P56589 373 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 KRT72Q14CN4 511 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 CBWD6Q4V339 395 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 CBWD3Q5JTY5 395 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 CBWD5Q5RIA9 395 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 CEP128Q6ZU80 1094 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 ZNF720Q7Z2F6 126 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 VPS52Q8N1B4 723 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 C1orf54Q8WWF1 131 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 PSPC1Q8WXF1 523 aaKnown RBP11.64□□□□□ -0.55
CUX1-204ENST00000393824 FOXP3Q9BZS1 431 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 TUT1Q9H6E5 874 aaKnown RBP11.64□□□□□ -0.55
CUX1-204ENST00000393824 KIAA1586Q9HCI6 787 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 AGPAT3Q9NRZ7 376 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 DNAJC17Q9NVM6 304 aaKnown RBP11.64□□□□□ -0.55
CUX1-204ENST00000393824 SAGE1Q9NXZ1 904 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 ANKFY1Q9P2R3 1169 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 TRIM17Q9Y577 477 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 SLC16A4O15374 487 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 TYROBPO43914 113 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 CYP1A2P05177 515 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 C6orf222P0C671 652 aaPredicted RBP11.64□□□□□ -0.55
CUX1-204ENST00000393824 FAM200BP0CF97 657 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 FGFR1P11362 822 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 AKR1A1P14550 325 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 ATF2P15336 505 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 RPA3P35244 121 aaPredicted RBP11.64□□□□□ -0.55
CUX1-204ENST00000393824 DSG1Q02413 1049 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 BFSP1Q12934 665 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 RASA2Q15283 850 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 SLC1A5Q15758 541 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 MARCH8Q5T0T0 291 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 MAP3K21Q5TCX8 1036 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 FAM160B1Q5W0V3 765 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 ANKS1BQ7Z6G8 1248 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 PPP2R3CQ969Q6 453 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 SMC6Q96SB8 1091 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 SMARCAD1Q9H4L7 1026 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 ERAP1Q9NZ08 941 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 UVRAGQ9P2Y5 699 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 NEU2Q9Y3R4 380 aa11.64□□□□□ -0.55
CUX1-204ENST00000393824 CASP8AP2Q9UKL3 1982 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 CLDN3O15551 220 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 SPOPO43791 374 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 MAGEC1O60732 1142 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 DGAT1O75907 488 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 ASLP04424 464 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 EDN1P05305 212 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 DLATP10515 647 aaKnown RBP11.63□□□□□ -0.55
CUX1-204ENST00000393824 NPTX2P47972 431 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 CLCN3P51790 818 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 INHBCP55103 352 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 IRF5Q13568 498 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 THOC5Q13769 683 aaKnown RBP11.63□□□□□ -0.55
CUX1-204ENST00000393824 HNRNPDQ14103 355 aaKnown RBP11.63□□□□□ -0.55
CUX1-204ENST00000393824 DGKDQ16760 1214 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 MFSD14CQ5VZR4 134 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 FAM178BQ8IXR5 827 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 ST13P4Q8IZP2 240 aaPredicted RBP11.63□□□□□ -0.55
CUX1-204ENST00000393824 ARHGAP24Q8N264 748 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 NME8Q8N427 588 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 RAET1EQ8TD07 263 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 NAT14Q8WUY8 206 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 C9orf72Q96LT7 481 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 CFAP57Q96MR6 1250 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 FNBP1Q96RU3 617 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 PPP1R16BQ96T49 567 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 ECSITQ9BQ95 431 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 STRA6Q9BX79 667 aa11.63□□□□□ -0.55
CUX1-204ENST00000393824 POLR3FQ9H1D9 316 aaPredicted RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms