RNA–Protein interactions for RNA: ENST00000391814.5

SHANK1-204, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHANK1, Length 6,622 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-204ENST00000391814 BMPR2Q13873 1038 aa16.71■□□□□ 0.27
SHANK1-204ENST00000391814 PDK3Q15120 406 aa16.71■□□□□ 0.27
SHANK1-204ENST00000391814 DDX50Q9BQ39 737 aaKnown RBP16.71■□□□□ 0.27
SHANK1-204ENST00000391814 CD209Q9NNX6 404 aa16.71■□□□□ 0.27
SHANK1-204ENST00000391814 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.71■□□□□ 0.27
SHANK1-204ENST00000391814 CNOT7Q9UIV1 285 aaKnown RBP16.71■□□□□ 0.27
SHANK1-204ENST00000391814 NAGPAQ9UK23 515 aa16.71■□□□□ 0.27
SHANK1-204ENST00000391814 CLCA2Q9UQC9 943 aa16.71■□□□□ 0.27
SHANK1-204ENST00000391814 KRT87PA6NCN2 255 aa16.71■□□□□ 0.27
SHANK1-204ENST00000391814 PIK3CDO00329 1044 aa16.71■□□□□ 0.27
SHANK1-204ENST00000391814 MED26O95402 600 aa16.71■□□□□ 0.27
SHANK1-204ENST00000391814 PGK2P07205 417 aa16.71■□□□□ 0.27
SHANK1-204ENST00000391814 CDK17Q00537 523 aa16.71■□□□□ 0.27
SHANK1-204ENST00000391814 BHLHE22Q8NFJ8 381 aaPredicted RBP16.71■□□□□ 0.27
SHANK1-204ENST00000391814 SLC10A4Q96EP9 437 aa16.71■□□□□ 0.27
SHANK1-204ENST00000391814 KRT84Q9NSB2 600 aa16.71■□□□□ 0.27
SHANK1-204ENST00000391814 GPRC5DQ9NZD1 345 aa16.71■□□□□ 0.27
SHANK1-204ENST00000391814 ABT1Q9ULW3 272 aaKnown RBP16.71■□□□□ 0.27
SHANK1-204ENST00000391814 FCGR1AP12314 374 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 JAK1P23458 1154 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 RPL21P46778 160 aaKnown RBP16.7■□□□□ 0.26
SHANK1-204ENST00000391814 POU4F1Q01851 419 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 OTUD3Q5T2D3 398 aaPredicted RBP16.7■□□□□ 0.26
SHANK1-204ENST00000391814 SYNE4Q8N205 404 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 IARS2Q9NSE4 1012 aaKnown RBP16.7■□□□□ 0.26
SHANK1-204ENST00000391814 CLIC5Q9NZA1 410 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 CDK16Q00536 496 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 ZSWIM7Q19AV6 140 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 SYTL3Q4VX76 610 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 GPAT2Q6NUI2 795 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 NARS2Q96I59 477 aaKnown RBP16.7■□□□□ 0.26
SHANK1-204ENST00000391814 C2orf40Q9H1Z8 148 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 ITGA4P13612 1032 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 ANTXR2P58335 489 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 BTBD8Q5XKL5 378 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 RPAP3Q9H6T3 665 aaPredicted RBP16.7■□□□□ 0.26
SHANK1-204ENST00000391814 ATXN10Q9UBB4 475 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 ZNF197O14709 1029 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 CNOT3O75175 753 aaKnown RBP16.7■□□□□ 0.26
SHANK1-204ENST00000391814 RBP3P10745 1247 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 RECQLP46063 649 aaPredicted RBP16.7■□□□□ 0.26
SHANK1-204ENST00000391814 ALDH1A3P47895 512 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 TAF5Q15542 800 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 DDR2Q16832 855 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 TMEM26Q6ZUK4 368 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 CHID1Q9BWS9 393 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 DMAP1Q9NPF5 467 aaPredicted RBP16.7■□□□□ 0.26
SHANK1-204ENST00000391814 COMMD3-BMI1R4GMX3 469 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 NRKQ7Z2Y5 1582 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 SUPT7LO94864 414 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 TCP10LQ8TDR4 215 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 LRRC7Q96NW7 1537 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 LOC102724428A0A0B4J2F2 783 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 CLOCKO15516 846 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 SIK1P57059 783 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 AGKQ53H12 422 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 FAM182BQ5T319 152 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 CWF19L1Q69YN2 538 aaKnown RBP16.7■□□□□ 0.26
SHANK1-204ENST00000391814 RNF148Q8N7C7 305 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 ZNF75CPQ92670 426 aaPredicted RBP16.7■□□□□ 0.26
SHANK1-204ENST00000391814 ZNF333Q96JL9 665 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 HMG20AQ9NP66 347 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 RNF112Q9ULX5 631 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 CHKBQ9Y259 395 aa16.7■□□□□ 0.26
SHANK1-204ENST00000391814 EIF3LQ9Y262 564 aaKnown RBP16.7■□□□□ 0.26
SHANK1-204ENST00000391814 DDX5P17844 614 aaKnown RBP16.69■□□□□ 0.26
SHANK1-204ENST00000391814 POU1F1P28069 291 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 FOXO4P98177 505 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 FAM83EQ2M2I3 478 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 EDRF1Q3B7T1 1238 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 C2CD6Q53TS8 623 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 TMED8Q6PL24 325 aaPredicted RBP16.69■□□□□ 0.26
SHANK1-204ENST00000391814 YTHDF3Q7Z739 585 aaKnown RBP16.69■□□□□ 0.26
SHANK1-204ENST00000391814 HPS1Q92902 700 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 TMEM121Q9BTD3 319 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 LGR5O75473 907 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 TGM2P21980 687 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 CYP2R1Q6VVX0 501 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 SERHL2Q9H4I8 314 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 SERHLQ9NQF3 203 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 WDR35Q9P2L0 1181 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 P4HA2O15460 535 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 HIST1H2AGP0C0S8 130 aaPredicted RBP16.69■□□□□ 0.26
SHANK1-204ENST00000391814 HIST1H2ADP20671 130 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 EPHA7Q15375 998 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 GOLGA7BQ2TAP0 167 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 C11orf88Q6PI97 169 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 HIST1H2AHQ96KK5 128 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 HIST1H2AJQ99878 128 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 MTA3Q9BTC8 594 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 H2AFJQ9BTM1 129 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 PLGRKTQ9HBL7 147 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 TOPORSQ9NS56 1045 aaPredicted RBP16.69■□□□□ 0.26
SHANK1-204ENST00000391814 GOLGA8TH3BQL2 631 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 CCT8P50990 548 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 NCF4Q15080 339 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 WDR72Q3MJ13 1102 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 MARK2Q7KZI7 788 aaKnown RBP16.69■□□□□ 0.26
SHANK1-204ENST00000391814 DHFR2Q86XF0 187 aa16.69■□□□□ 0.26
SHANK1-204ENST00000391814 FIG4Q92562 907 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms