RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 RGS18Q9NS28 235 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 DSEQ9UL01 958 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 PRR12Q9ULL5 1215 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 BMP10O95393 424 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 CRTAMO95727 393 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 PURAQ00577 322 aaKnown RBP13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 C1DQ13901 141 aaKnown RBP13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 C19orf18Q8NEA5 215 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 EFCAB1Q9HAE3 211 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 ENTPD7Q9NQZ7 604 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 PCNAP12004 261 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 TALDO1P37837 337 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 DENND5BQ6ZUT9 1274 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 SRLQ86TD4 932 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 AGPAT5Q9NUQ2 364 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 UBQLN1Q9UMX0 589 aaKnown RBP13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 MAGEA13PA6NCF6 341 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 CYP27B1O15528 508 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 ZNF23P17027 643 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 GTF2E2P29084 291 aaKnown RBP13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 CDK5RAP1Q96SZ6 601 aaKnown RBP13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 PADI4Q9UM07 663 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 PEX5P50542 639 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 FXR2P51116 673 aaKnown RBP eCLIP13.23□□□□□ -0.297e-6■■■■□ 23.7
CCDC88C-204ENST00000389857 FCGRTP55899 365 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 CUL2Q13617 745 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 SCARF1Q14162 830 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 ADGRE3Q9BY15 652 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 OSBPL6Q9BZF3 934 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 CLPBQ9H078 707 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 TBX20Q9UMR3 447 aa13.23□□□□□ -0.29
CCDC88C-204ENST00000389857 SUPT7LO94864 414 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 PSMC3P17980 439 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 SERPINB5P36952 375 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 RFX3P48380 749 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 YWHAZP63104 245 aaKnown RBP13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 ZC2HC1CQ53FD0 456 aaPredicted RBP13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 PARVBQ9HBI1 364 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 IGF2BP3O00425 579 aaKnown RBP eCLIP13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 C2CD2LO14523 706 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 TRIM24O15164 1050 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 HOXA2O43364 376 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 CYP2B6P20813 491 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 MMRN1Q13201 1228 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 ZNF521Q96K83 1311 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 TRIM49D1C9J1S8 452 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 ATMINO43313 823 aaPredicted RBP13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 TBC1D16Q8TBP0 767 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 PHACTR1Q9C0D0 580 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 VCPKMTQ9H867 229 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 PDGFCQ9NRA1 345 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 ZNF70Q9UC06 446 aaPredicted RBP13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 ALG6Q9Y672 507 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 SPHKAPQ2M3C7 1700 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 SDR42E2A6NKP2 422 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 SNAP23O00161 211 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 FCGR1AP12314 374 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 BFSP2Q13515 415 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 HHIPL2Q6UWX4 724 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 FAM118BQ9BPY3 351 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 DDIT4Q9NX09 232 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 DAGLAQ9Y4D2 1042 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 SLCO1B7G3V0H7 640 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 MBL2P11226 248 aaPredicted RBP13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 YWHAQP27348 245 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 MLH1P40692 756 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 MAGEA10P43363 369 aaPredicted RBP13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 ITIH4Q14624 930 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 EXD1Q8NHP7 514 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 MAGEB18Q96M61 343 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 TNS3Q68CZ2 1445 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 GSTM1P09488 218 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 COX10Q12887 443 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 FBXW10Q5XX13 1052 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 CARNMT1Q8N4J0 409 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 PNKPQ96T60 521 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 PLA2G12BQ9BX93 195 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 KIAA1257Q9ULG3 409 aa13.22□□□□□ -0.29
CCDC88C-204ENST00000389857 ATP6V1C1P21283 382 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 TFDP3Q5H9I0 405 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 FAM45BPQ6NSW5 357 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 PHACTR4Q8IZ21 702 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 CDK20Q8IZL9 346 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 ZNF614Q8N883 585 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 FBXO32Q969P5 355 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 RPRD1AQ96P16 312 aaPredicted RBP13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 MAP3K14Q99558 947 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 NFKBIZQ9BYH8 718 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 CRB1P82279 1406 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 ZW10O43264 779 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 CNOT3O75175 753 aaKnown RBP13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 TFRCP02786 760 aaKnown RBP13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 RPLP2P05387 115 aaKnown RBP13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 ACADMP11310 421 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 KPNA1P52294 538 aaPredicted RBP13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 OXCT1P55809 520 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 EXOSC10Q01780 885 aaKnown RBP13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 PDIA6Q15084 440 aa13.21□□□□□ -0.29
CCDC88C-204ENST00000389857 KLHDC7AQ5VTJ3 777 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms