RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 C12orf65Q9H3J6 166 aaKnown RBP14.01□□□□□ -0.17
CCDC3-202ENST00000378839 DPEP3Q9H4B8 488 aa14.01□□□□□ -0.17
CCDC3-202ENST00000378839 VTA1Q9NP79 307 aa14.01□□□□□ -0.17
CCDC3-202ENST00000378839 FAM49BQ9NUQ9 324 aa14.01□□□□□ -0.17
CCDC3-202ENST00000378839 WDR35Q9P2L0 1181 aa14.01□□□□□ -0.17
CCDC3-202ENST00000378839 PRKAG3Q9UGI9 489 aa14.01□□□□□ -0.17
CCDC3-202ENST00000378839 GINS2Q9Y248 185 aa14.01□□□□□ -0.17
CCDC3-202ENST00000378839 NPTXRO95502 500 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 MMP3P08254 477 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 RPA3P35244 121 aaPredicted RBP14□□□□□ -0.17
CCDC3-202ENST00000378839 EIF3EP60228 445 aaKnown RBP14□□□□□ -0.17
CCDC3-202ENST00000378839 ATP11AP98196 1134 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 HADHQ16836 314 aaKnown RBP14□□□□□ -0.17
CCDC3-202ENST00000378839 GOLGA7BQ2TAP0 167 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 FAM133BQ5BKY9 247 aaKnown RBP14□□□□□ -0.17
CCDC3-202ENST00000378839 GLRA4Q5JXX5 417 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 OR6B2Q6IFH4 312 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 BRI3BPQ8WY22 251 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 SLC10A4Q96EP9 437 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 RMDN2Q96LZ7 410 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 ITGA11Q9UKX5 1188 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 C2CD2Q9Y426 696 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 ASMTLO95671 621 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 PDGFRAP16234 1089 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 ATP5DP30049 168 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 RBP5P82980 135 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 SLC1A5Q15758 541 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 HIF1AQ16665 826 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 TRPM8Q7Z2W7 1104 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 ZC3H18Q86VM9 953 aaKnown RBP14□□□□□ -0.17
CCDC3-202ENST00000378839 TDRPQ86YL5 185 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 SCUBE3Q8IX30 993 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 SPATA18Q8TC71 538 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 CLEC4CQ8WTT0 213 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 LENG1Q96BZ8 264 aaPredicted RBP14□□□□□ -0.17
CCDC3-202ENST00000378839 FAXDC2Q96IV6 333 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 SAMD15Q9P1V8 674 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 CEP350Q5VT06 3117 aa14□□□□□ -0.17
CCDC3-202ENST00000378839 APOC4-APOC2K7ER74 178 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 CITO14578 2027 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 AVILO75366 819 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 APOC2P02655 101 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 GHRP10912 638 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 GPD1P21695 349 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 ATXN1P54253 815 aaKnown RBP13.99□□□□□ -0.17
CCDC3-202ENST00000378839 PRAMEF19Q5SWL8 479 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 OLFML1Q6UWY5 402 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 FAM228AQ86W67 206 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 PPIL6Q8IXY8 311 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 FUKQ8N0W3 1084 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 PQLC3Q8N755 202 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 MZB1Q8WU39 189 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 ZNF408Q9H9D4 720 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 ACTR5Q9H9F9 607 aaPredicted RBP13.99□□□□□ -0.17
CCDC3-202ENST00000378839 GPR32O75388 356 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 UBOX5O94941 541 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 RBP3P10745 1247 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 CDH6P55285 790 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 GPR162Q16538 588 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 ZNF618Q5T7W0 954 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 C1orf228Q6PIY5 440 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 CENPUQ71F23 418 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 KIRREL3Q8IZU9 778 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 NPLOC4Q8TAT6 608 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 ZC3H15Q8WU90 426 aaKnown RBP13.99□□□□□ -0.17
CCDC3-202ENST00000378839 MAGEB18Q96M61 343 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 TRABDQ9H4I3 376 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 USP29Q9HBJ7 922 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 GEMIN8Q9NWZ8 242 aaKnown RBP13.99□□□□□ -0.17
CCDC3-202ENST00000378839 PNMA3Q9UL41 463 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 USP15Q9Y4E8 981 aaPredicted RBP13.99□□□□□ -0.17
CCDC3-202ENST00000378839 ACTL7BQ9Y614 415 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 FAM47DPA6NHR8 397 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 STX2P32856 288 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 PCK1P35558 622 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 GRM5P41594 1212 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 GCLCP48506 637 aaPredicted RBP13.99□□□□□ -0.17
CCDC3-202ENST00000378839 ZBTB6Q15916 424 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 FBXO36Q8NEA4 188 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 THOC1Q96FV9 657 aaKnown RBP13.99□□□□□ -0.17
CCDC3-202ENST00000378839 MAML3Q96JK9 1138 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 CNPY3Q9BT09 278 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 NT5C1AQ9BXI3 368 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 FAM49AQ9H0Q0 323 aaPredicted RBP13.99□□□□□ -0.17
CCDC3-202ENST00000378839 SLCO1B3Q9NPD5 702 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 SNX9Q9Y5X1 595 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 COL1A2P08123 1366 aa13.99□□□□□ -0.17
CCDC3-202ENST00000378839 E7ESA3 106 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 PAPSS1O43252 624 aaPredicted RBP13.98□□□□□ -0.17
CCDC3-202ENST00000378839 TYROBPO43914 113 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 STAU1O95793 577 aaKnown RBP13.98□□□□□ -0.17
CCDC3-202ENST00000378839 HOXD8P13378 290 aaPredicted RBP13.98□□□□□ -0.17
CCDC3-202ENST00000378839 IGFBP6P24592 240 aaPredicted RBP13.98□□□□□ -0.17
CCDC3-202ENST00000378839 GALNTL6Q49A17 601 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 EFHC2Q5JST6 749 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 FAM47EQ6ZV65 393 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 FITM2Q8N6M3 262 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 PLD5Q8N7P1 536 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 TMEM40Q8WWA1 233 aa13.98□□□□□ -0.17
CCDC3-202ENST00000378839 RSAD2Q8WXG1 361 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms