RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 POLBP06746 335 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 FSHRP23945 695 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 MAZP56270 477 aaKnown RBP9.02□□□□□ -0.97
LIG3-202ENST00000378526 YWHAZP63104 245 aaKnown RBP9.02□□□□□ -0.97
LIG3-202ENST00000378526 ANO4Q32M45 955 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 CXXC5Q7LFL8 322 aaKnown RBP9.02□□□□□ -0.97
LIG3-202ENST00000378526 DGKHQ86XP1 1220 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 TMEM35BQ8NCS4 154 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 BBS1Q8NFJ9 593 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 OR6P1Q8NGX9 317 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 ZIM3Q96PE6 472 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 CLK4Q9HAZ1 481 aaKnown RBP9.02□□□□□ -0.97
LIG3-202ENST00000378526 IL1RL2Q9HB29 575 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 TRPC4Q9UBN4 977 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 DBR1Q9UK59 544 aaKnown RBP9.02□□□□□ -0.97
LIG3-202ENST00000378526 RAD54BQ9Y620 910 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 GSTM1P09488 218 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 SPIDRQ14159 915 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 MTERF2Q49AM1 385 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 XKRXQ6PP77 449 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 RASGRP2Q7LDG7 609 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 EXO5Q9H790 373 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 CCNB1IP1Q9NPC3 277 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 CLCA2Q9UQC9 943 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 CENPBD1B2RD01 187 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 MSLNQ13421 630 aaPredicted RBP9.02□□□□□ -0.97
LIG3-202ENST00000378526 ARSHQ5FYA8 562 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 TTC23Q5W5X9 447 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 RBM44Q6ZP01 1051 aaKnown RBP9.02□□□□□ -0.97
LIG3-202ENST00000378526 C3orf62Q6ZUJ4 267 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 CDK20Q8IZL9 346 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 TMCO6Q96DC7 493 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 ZNF333Q96JL9 665 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 SLC5A4Q9NY91 659 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 ZNF432O94892 652 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 LBPP18428 481 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 CCND2P30279 289 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 RGS1Q08116 209 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 RBBP4Q09028 425 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 ITGA7Q13683 1181 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 GLG1Q92896 1179 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 PTPRN2Q92932 1015 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 ZBTB3Q9H5J0 574 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 AASSQ9UDR5 926 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 TBC1D24Q9ULP9 559 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 PCDHGA11Q9Y5H2 935 aa9.02□□□□□ -0.97
LIG3-202ENST00000378526 REM1O75628 298 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 AADACL4Q5VUY2 407 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 OR5J2Q8NH18 312 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 CKAP2Q8WWK9 683 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 ZSCAN10Q96SZ4 725 aaPredicted RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 LBHD1Q9BQE6 289 aaPredicted RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 UPB1Q9UBR1 384 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 DDX20Q9UHI6 824 aaKnown RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 FNDC3AQ9Y2H6 1198 aaKnown RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 FOXN3O00409 490 aaPredicted RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 CRTAPO75718 401 aaPredicted RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 P4HBP07237 508 aaKnown RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 SERPINB5P36952 375 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 SCN1BQ07699 218 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 CLEC16AQ2KHT3 1053 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 TBRG1Q3YBR2 411 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 RNF219Q5W0B1 726 aaPredicted RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 TIGD7Q6NT04 549 aaPredicted RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 LMBR1LQ6UX01 489 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 FAM43BQ6ZT52 329 aaPredicted RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 OR4C6Q8NH72 309 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 PIK3R3Q92569 461 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 CLP1Q92989 425 aaKnown RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 TCEAL7Q9BRU2 100 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 PCMTD2Q9NV79 361 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 MRPL11Q9Y3B7 192 aaKnown RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 SH3BP1Q9Y3L3 701 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 RPAP1Q9BWH6 1393 aaPredicted RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 KMOO15229 486 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 FAM153BP0C7A2 387 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 PRKAA2P54646 552 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 PTK6Q13882 451 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 GRHL2Q6ISB3 625 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 GCNAQ96QF7 691 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 RNF26Q9BY78 433 aaPredicted RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 TDRKHQ9Y2W6 561 aaKnown RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 REXO2Q9Y3B8 237 aaKnown RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 ERBB4Q15303 1308 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 ORC5O43913 435 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 SLC5A9Q2M3M2 681 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 LRRC24Q50LG9 513 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 AGAP9Q5VTM2 703 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 PLCZ1Q86YW0 608 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 INO80EQ8NBZ0 244 aaPredicted RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 PGBD4Q96DM1 585 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 CEP170P1Q96L14 293 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 EHD4Q9H223 541 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 ALG13Q9NP73 1137 aaKnown RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 EIF2AK2P19525 551 aaKnown RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 CHI3L1P36222 383 aaPredicted RBP9.01□□□□□ -0.97
LIG3-202ENST00000378526 NPTX2P47972 431 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 RGS6P49758 472 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 BCAR1P56945 870 aa9.01□□□□□ -0.97
LIG3-202ENST00000378526 SAMD4BQ5PRF9 694 aaKnown RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms