RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 ECT2Q9H8V3 914 aa23.05■■□□□ 1.28
CCDC28B-201ENST00000373602 WNT6Q9Y6F9 365 aa23.05■■□□□ 1.28
CCDC28B-201ENST00000373602 OLFM2O95897 454 aa23.04■■□□□ 1.28
CCDC28B-201ENST00000373602 IFNAR2P48551 515 aa23.04■■□□□ 1.28
CCDC28B-201ENST00000373602 SLC7A9P82251 487 aa23.04■■□□□ 1.28
CCDC28B-201ENST00000373602 ZXDBP98169 803 aa23.04■■□□□ 1.28
CCDC28B-201ENST00000373602 EML3Q32P44 896 aa23.04■■□□□ 1.28
CCDC28B-201ENST00000373602 COBLL1Q53SF7 1204 aa23.04■■□□□ 1.28
CCDC28B-201ENST00000373602 FSTL4Q6MZW2 842 aa23.04■■□□□ 1.28
CCDC28B-201ENST00000373602 TTC16Q8NEE8 873 aa23.04■■□□□ 1.28
CCDC28B-201ENST00000373602 OVCA2Q8WZ82 227 aa23.04■■□□□ 1.28
CCDC28B-201ENST00000373602 GSDMAQ96QA5 445 aa23.04■■□□□ 1.28
CCDC28B-201ENST00000373602 RNF38Q9H0F5 515 aa23.04■■□□□ 1.28
CCDC28B-201ENST00000373602 EPC1Q9H2F5 836 aa23.04■■□□□ 1.28
CCDC28B-201ENST00000373602 APOBEC3GQ9HC16 384 aaKnown RBP23.04■■□□□ 1.28
CCDC28B-201ENST00000373602 TMEM8AQ9HCN3 771 aa23.04■■□□□ 1.28
CCDC28B-201ENST00000373602 DMAP1Q9NPF5 467 aaPredicted RBP23.04■■□□□ 1.28
CCDC28B-201ENST00000373602 IL37Q9NZH6 218 aa23.04■■□□□ 1.28
CCDC28B-201ENST00000373602 HMGXB4Q9UGU5 601 aa23.04■■□□□ 1.28
CCDC28B-201ENST00000373602 VPS13AQ96RL7 3174 aa23.04■■□□□ 1.28
CCDC28B-201ENST00000373602 TNFRSF10BO14763 440 aa23.03■■□□□ 1.28
CCDC28B-201ENST00000373602 OAS1P00973 400 aaKnown RBP23.03■■□□□ 1.28
CCDC28B-201ENST00000373602 GTF2H1P32780 548 aa23.03■■□□□ 1.28
CCDC28B-201ENST00000373602 GJA4P35212 333 aa23.03■■□□□ 1.28
CCDC28B-201ENST00000373602 PRCPP42785 496 aa23.03■■□□□ 1.28
CCDC28B-201ENST00000373602 INCA1Q0VD86 236 aa23.03■■□□□ 1.28
CCDC28B-201ENST00000373602 GRSF1Q12849 480 aaKnown RBP eCLIP23.03■■□□□ 1.28
CCDC28B-201ENST00000373602 IFRD2Q12894 506 aaPredicted RBP23.03■■□□□ 1.28
CCDC28B-201ENST00000373602 ORC1Q13415 861 aa23.03■■□□□ 1.28
CCDC28B-201ENST00000373602 ZNF658Q5TYW1 1059 aaPredicted RBP23.03■■□□□ 1.28
CCDC28B-201ENST00000373602 SPATA20Q8TB22 786 aa23.03■■□□□ 1.28
CCDC28B-201ENST00000373602 RUBCNQ92622 972 aa23.03■■□□□ 1.28
CCDC28B-201ENST00000373602 ATP2A3Q93084 1043 aa23.03■■□□□ 1.28
CCDC28B-201ENST00000373602 TIGD1Q96MW7 591 aa23.03■■□□□ 1.28
CCDC28B-201ENST00000373602 CYP3A43Q9HB55 503 aa23.03■■□□□ 1.28
CCDC28B-201ENST00000373602 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.03■■□□□ 1.287e-11■■■■■ 260.8
CCDC28B-201ENST00000373602 KRT82Q9NSB4 513 aa23.03■■□□□ 1.28
CCDC28B-201ENST00000373602 GVINP1Q7Z2Y8 2422 aa23.03■■□□□ 1.28
CCDC28B-201ENST00000373602 HELZP42694 1942 aaKnown RBP23.02■■□□□ 1.28
CCDC28B-201ENST00000373602 LEFTY2O00292 366 aa23.02■■□□□ 1.28
CCDC28B-201ENST00000373602 AP1G2O75843 785 aa23.02■■□□□ 1.28
CCDC28B-201ENST00000373602 SMC2O95347 1197 aa23.02■■□□□ 1.28
CCDC28B-201ENST00000373602 ABL1P00519 1130 aa23.02■■□□□ 1.28
CCDC28B-201ENST00000373602 CCDC130P13994 396 aa23.02■■□□□ 1.28
CCDC28B-201ENST00000373602 KRT39Q6A163 491 aa23.02■■□□□ 1.28
CCDC28B-201ENST00000373602 KIAA1958Q8N8K9 716 aa23.02■■□□□ 1.28
CCDC28B-201ENST00000373602 PDZD8Q8NEN9 1154 aa23.02■■□□□ 1.28
CCDC28B-201ENST00000373602 SLC2A14Q8TDB8 520 aa23.02■■□□□ 1.28
CCDC28B-201ENST00000373602 FBXO32Q969P5 355 aa23.02■■□□□ 1.28
CCDC28B-201ENST00000373602 SMOQ99835 787 aa23.02■■□□□ 1.28
CCDC28B-201ENST00000373602 LINC00597Q9H2U6 94 aa23.02■■□□□ 1.28
CCDC28B-201ENST00000373602 MMRN2Q9H8L6 949 aa23.02■■□□□ 1.28
CCDC28B-201ENST00000373602 C2orf42Q9NWW7 574 aa23.02■■□□□ 1.28
CCDC28B-201ENST00000373602 COMMD8Q9NX08 183 aa23.02■■□□□ 1.28
CCDC28B-201ENST00000373602 PCDHA5Q9Y5H7 936 aa23.02■■□□□ 1.28
CCDC28B-201ENST00000373602 EP300Q09472 2414 aaPredicted RBP23.02■■□□□ 1.28
CCDC28B-201ENST00000373602 OTOGLQ3ZCN5 2332 aa23.02■■□□□ 1.28
CCDC28B-201ENST00000373602 K7ESF4 209 aa23.01■■□□□ 1.27
CCDC28B-201ENST00000373602 CETN3O15182 167 aa23.01■■□□□ 1.27
CCDC28B-201ENST00000373602 GALK1P51570 392 aa23.01■■□□□ 1.27
CCDC28B-201ENST00000373602 SLC5A3P53794 718 aa23.01■■□□□ 1.27
CCDC28B-201ENST00000373602 C12orf29Q8N999 325 aa23.01■■□□□ 1.27
CCDC28B-201ENST00000373602 ZMIZ2Q8NF64 920 aa23.01■■□□□ 1.27
CCDC28B-201ENST00000373602 SCAMP5Q8TAC9 235 aa23.01■■□□□ 1.27
CCDC28B-201ENST00000373602 EEF2KMTQ96G04 330 aa23.01■■□□□ 1.27
CCDC28B-201ENST00000373602 TWNKQ96RR1 684 aa23.01■■□□□ 1.27
CCDC28B-201ENST00000373602 P2RY13Q9BPV8 354 aa23.01■■□□□ 1.27
CCDC28B-201ENST00000373602 NIF3L1Q9GZT8 377 aa23.01■■□□□ 1.27
CCDC28B-201ENST00000373602 FBRSL1Q9HCM7 1045 aaKnown RBP23.01■■□□□ 1.27
CCDC28B-201ENST00000373602 CSNK1G1Q9HCP0 422 aa23.01■■□□□ 1.27
CCDC28B-201ENST00000373602 CPQQ9Y646 472 aa23.01■■□□□ 1.27
CCDC28B-201ENST00000373602 FAM92AA1XBS5 289 aa23■■□□□ 1.27
CCDC28B-201ENST00000373602 BEST1O76090 585 aa23■■□□□ 1.27
CCDC28B-201ENST00000373602 EPB41P11171 864 aaKnown RBP23■■□□□ 1.27
CCDC28B-201ENST00000373602 DRD1P21728 446 aa23■■□□□ 1.27
CCDC28B-201ENST00000373602 NR1H3Q13133 447 aa23■■□□□ 1.27
CCDC28B-201ENST00000373602 SNX30Q5VWJ9 437 aa23■■□□□ 1.27
CCDC28B-201ENST00000373602 CCDC150Q8NCX0 1101 aa23■■□□□ 1.27
CCDC28B-201ENST00000373602 ERCC4Q92889 916 aaPredicted RBP23■■□□□ 1.27
CCDC28B-201ENST00000373602 SMARCE1Q969G3 411 aa23■■□□□ 1.27
CCDC28B-201ENST00000373602 EXOC4Q96A65 974 aa23■■□□□ 1.27
CCDC28B-201ENST00000373602 HINFPQ9BQA5 517 aa23■■□□□ 1.27
CCDC28B-201ENST00000373602 GTPBP4Q9BZE4 634 aaKnown RBP23■■□□□ 1.27
CCDC28B-201ENST00000373602 FAM49BQ9NUQ9 324 aa23■■□□□ 1.27
CCDC28B-201ENST00000373602 CHORDC1Q9UHD1 332 aaPredicted RBP23■■□□□ 1.27
CCDC28B-201ENST00000373602 SMG5Q9UPR3 1016 aaKnown RBP23■■□□□ 1.27
CCDC28B-201ENST00000373602 GPR179Q6PRD1 2367 aa22.99■■□□□ 1.27
CCDC28B-201ENST00000373602 NFATC1O95644 943 aa22.99■■□□□ 1.27
CCDC28B-201ENST00000373602 EGFP01133 1207 aa22.99■■□□□ 1.27
CCDC28B-201ENST00000373602 ZDHHC11BP0C7U3 371 aa22.99■■□□□ 1.27
CCDC28B-201ENST00000373602 TRIM21P19474 475 aaKnown RBP22.99■■□□□ 1.27
CCDC28B-201ENST00000373602 NAIF1Q69YI7 327 aaPredicted RBP22.99■■□□□ 1.27
CCDC28B-201ENST00000373602 PKN3Q6P5Z2 889 aa22.99■■□□□ 1.27
CCDC28B-201ENST00000373602 ZC3H3Q8IXZ2 948 aaKnown RBP22.99■■□□□ 1.27
CCDC28B-201ENST00000373602 ELOA2Q8IYF1 753 aaPredicted RBP22.99■■□□□ 1.27
CCDC28B-201ENST00000373602 DCLK2Q8N568 766 aa22.99■■□□□ 1.27
CCDC28B-201ENST00000373602 WHAMMQ8TF30 809 aa22.99■■□□□ 1.27
CCDC28B-201ENST00000373602 CD101Q93033 1021 aa22.99■■□□□ 1.27
CCDC28B-201ENST00000373602 HNRNPABQ99729 332 aaKnown RBP22.99■■□□□ 1.27
CCDC28B-201ENST00000373602 TSG101Q99816 390 aa22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms