RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 HSPA1LP34931 641 aa17.11■□□□□ 0.33
SDC4-201ENST00000372733 PAPOLAP51003 745 aaKnown RBP17.11■□□□□ 0.33
SDC4-201ENST00000372733 XKR3Q5GH77 459 aa17.11■□□□□ 0.33
SDC4-201ENST00000372733 FOXB2Q5VYV0 432 aa17.11■□□□□ 0.33
SDC4-201ENST00000372733 NPNTQ6UXI9 565 aa17.11■□□□□ 0.33
SDC4-201ENST00000372733 ABHD15Q6UXT9 468 aa17.11■□□□□ 0.33
SDC4-201ENST00000372733 HSPH1Q92598 858 aa17.11■□□□□ 0.33
SDC4-201ENST00000372733 IFT43Q96FT9 208 aa17.11■□□□□ 0.33
SDC4-201ENST00000372733 SRPK1Q96SB4 655 aaKnown RBP17.11■□□□□ 0.33
SDC4-201ENST00000372733 NIF3L1Q9GZT8 377 aa17.11■□□□□ 0.33
SDC4-201ENST00000372733 ZNF395Q9H8N7 513 aaPredicted RBP17.11■□□□□ 0.33
SDC4-201ENST00000372733 TRIM49D1C9J1S8 452 aa17.1■□□□□ 0.33
SDC4-201ENST00000372733 LDHAP00338 332 aaKnown RBP17.1■□□□□ 0.33
SDC4-201ENST00000372733 KRT7P08729 469 aa17.1■□□□□ 0.33
SDC4-201ENST00000372733 KRT3P12035 628 aa17.1■□□□□ 0.33
SDC4-201ENST00000372733 HIRAP54198 1017 aaPredicted RBP17.1■□□□□ 0.33
SDC4-201ENST00000372733 MTMR2Q13614 643 aa17.1■□□□□ 0.33
SDC4-201ENST00000372733 DPYSL3Q14195 570 aa17.1■□□□□ 0.33
SDC4-201ENST00000372733 CES4AQ5XG92 561 aa17.1■□□□□ 0.33
SDC4-201ENST00000372733 ZBTB33Q86T24 672 aa17.1■□□□□ 0.33
SDC4-201ENST00000372733 CFAP61Q8NHU2 1237 aa17.1■□□□□ 0.33
SDC4-201ENST00000372733 CLPTM1LQ96KA5 538 aa17.1■□□□□ 0.33
SDC4-201ENST00000372733 PORCNQ9H237 461 aa17.1■□□□□ 0.33
SDC4-201ENST00000372733 RPAP3Q9H6T3 665 aaPredicted RBP17.1■□□□□ 0.33
SDC4-201ENST00000372733 PGAP2Q9UHJ9 254 aa17.1■□□□□ 0.33
SDC4-201ENST00000372733 EFR3BQ9Y2G0 817 aa17.1■□□□□ 0.33
SDC4-201ENST00000372733 B2RBV5 119 aa17.1■□□□□ 0.33
SDC4-201ENST00000372733 COPEO14579 308 aa17.1■□□□□ 0.33
SDC4-201ENST00000372733 MCF2LO15068 1137 aa17.1■□□□□ 0.33
SDC4-201ENST00000372733 MAP3K7O43318 606 aa17.1■□□□□ 0.33
SDC4-201ENST00000372733 NAMPTP43490 491 aa17.1■□□□□ 0.33
SDC4-201ENST00000372733 HSF5Q4G112 596 aaPredicted RBP17.1■□□□□ 0.33
SDC4-201ENST00000372733 CTAGE3PQ8IX95 158 aa17.1■□□□□ 0.33
SDC4-201ENST00000372733 PPFIBP2Q8ND30 876 aa17.1■□□□□ 0.33
SDC4-201ENST00000372733 CALN1Q9BXU9 219 aa17.1■□□□□ 0.33
SDC4-201ENST00000372733 IQCGQ9H095 443 aaKnown RBP17.1■□□□□ 0.33
SDC4-201ENST00000372733 PPARGC1AQ9UBK2 798 aaKnown RBP17.1■□□□□ 0.33
SDC4-201ENST00000372733 CD19P15391 556 aa17.09■□□□□ 0.33
SDC4-201ENST00000372733 CDH5P33151 784 aaPredicted RBP17.09■□□□□ 0.33
SDC4-201ENST00000372733 GCLCP48506 637 aaPredicted RBP17.09■□□□□ 0.33
SDC4-201ENST00000372733 TAZQ16635 292 aa17.09■□□□□ 0.33
SDC4-201ENST00000372733 HADHQ16836 314 aaKnown RBP17.09■□□□□ 0.33
SDC4-201ENST00000372733 AP1ARQ63HQ0 302 aa17.09■□□□□ 0.33
SDC4-201ENST00000372733 APLFQ8IW19 511 aaPredicted RBP17.09■□□□□ 0.33
SDC4-201ENST00000372733 BRSK2Q8IWQ3 736 aa17.09■□□□□ 0.33
SDC4-201ENST00000372733 PPM1NQ8N819 430 aa17.09■□□□□ 0.33
SDC4-201ENST00000372733 KCTD6Q8NC69 237 aa17.09■□□□□ 0.33
SDC4-201ENST00000372733 RBM15BQ8NDT2 890 aaKnown RBP17.09■□□□□ 0.33
SDC4-201ENST00000372733 SPATA18Q8TC71 538 aa17.09■□□□□ 0.33
SDC4-201ENST00000372733 AKT1S1Q96B36 256 aa17.09■□□□□ 0.33
SDC4-201ENST00000372733 MARCOQ9UEW3 520 aaPredicted RBP17.09■□□□□ 0.33
SDC4-201ENST00000372733 TEX264Q9Y6I9 313 aa17.09■□□□□ 0.33
SDC4-201ENST00000372733 SUPT20HL2P0C7V6 817 aa17.09■□□□□ 0.33
SDC4-201ENST00000372733 EIF4BP23588 611 aaKnown RBP17.09■□□□□ 0.33
SDC4-201ENST00000372733 ABCD1P33897 745 aa17.09■□□□□ 0.33
SDC4-201ENST00000372733 CACNA2D1P54289 1103 aa17.09■□□□□ 0.33
SDC4-201ENST00000372733 PSMC1P62191 440 aaKnown RBP17.09■□□□□ 0.33
SDC4-201ENST00000372733 BST1Q10588 318 aa17.09■□□□□ 0.33
SDC4-201ENST00000372733 MMRN1Q13201 1228 aa17.09■□□□□ 0.33
SDC4-201ENST00000372733 ORC1Q13415 861 aa17.09■□□□□ 0.33
SDC4-201ENST00000372733 SUPT20HL1Q3ZLR7 823 aa17.09■□□□□ 0.33
SDC4-201ENST00000372733 CWF19L1Q69YN2 538 aaKnown RBP17.09■□□□□ 0.33
SDC4-201ENST00000372733 ARID3BQ8IVW6 561 aaPredicted RBP17.09■□□□□ 0.33
SDC4-201ENST00000372733 ZNF184Q99676 751 aaPredicted RBP17.09■□□□□ 0.33
SDC4-201ENST00000372733 FRMD8P1Q9BZ68 369 aaPredicted RBP17.09■□□□□ 0.33
SDC4-201ENST00000372733 ZNF518BQ9C0D4 1074 aa17.09■□□□□ 0.33
SDC4-201ENST00000372733 ZNF212Q9UDV6 495 aa17.09■□□□□ 0.33
SDC4-201ENST00000372733 APOC4-APOC2K7ER74 178 aa17.08■□□□□ 0.33
SDC4-201ENST00000372733 VWA5AO00534 786 aa17.08■□□□□ 0.33
SDC4-201ENST00000372733 AP1G2O75843 785 aa17.08■□□□□ 0.33
SDC4-201ENST00000372733 SNUPNO95149 360 aaKnown RBP17.08■□□□□ 0.33
SDC4-201ENST00000372733 APOC2P02655 101 aa17.08■□□□□ 0.33
SDC4-201ENST00000372733 UBTFL6P0CB48 400 aaPredicted RBP17.08■□□□□ 0.33
SDC4-201ENST00000372733 TSHRP16473 764 aa17.08■□□□□ 0.33
SDC4-201ENST00000372733 XRRA1Q6P2D8 792 aa17.08■□□□□ 0.33
SDC4-201ENST00000372733 THNSL1Q8IYQ7 743 aa17.08■□□□□ 0.33
SDC4-201ENST00000372733 PCDHGC3Q9UN70 934 aa17.08■□□□□ 0.33
SDC4-201ENST00000372733 TTLL3Q9Y4R7 772 aa17.08■□□□□ 0.33
SDC4-201ENST00000372733 CAPN14A8MX76 684 aa17.08■□□□□ 0.32
SDC4-201ENST00000372733 CXorf49A8MYA2 514 aaPredicted RBP17.08■□□□□ 0.32
SDC4-201ENST00000372733 KITP10721 976 aa17.08■□□□□ 0.32
SDC4-201ENST00000372733 RAP1GAPP47736 663 aa17.08■□□□□ 0.32
SDC4-201ENST00000372733 TMPRSS15P98073 1019 aa17.08■□□□□ 0.32
SDC4-201ENST00000372733 KDSRQ06136 332 aa17.08■□□□□ 0.32
SDC4-201ENST00000372733 BMPR2Q13873 1038 aa17.08■□□□□ 0.32
SDC4-201ENST00000372733 KCNJ11Q14654 390 aa17.08■□□□□ 0.32
SDC4-201ENST00000372733 ZRSR2Q15696 482 aaKnown RBP17.08■□□□□ 0.32
SDC4-201ENST00000372733 FAM83AQ86UY5 434 aa17.08■□□□□ 0.32
SDC4-201ENST00000372733 CCDC110Q8TBZ0 833 aa17.08■□□□□ 0.32
SDC4-201ENST00000372733 ACAP3Q96P50 834 aa17.08■□□□□ 0.32
SDC4-201ENST00000372733 CPXM1Q96SM3 734 aa17.08■□□□□ 0.32
SDC4-201ENST00000372733 I3L4J1 428 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 SMAPO00193 183 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 CYB561D2O14569 222 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 IL1BP01584 269 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 MIPP30301 263 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 ARL2P36404 184 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 RAP1GDS1P52306 607 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 ROR1Q01973 937 aa17.07■□□□□ 0.32
SDC4-201ENST00000372733 BIRC2Q13490 618 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms