RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 HASPINQ8TF76 798 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 TNIP3Q96KP6 325 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 TRIM51Q9BSJ1 452 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 TRIM31Q9BZY9 425 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 ELAC1Q9H777 363 aaKnown RBP13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 YY1AP1Q9H869 796 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 MRPL47Q9HD33 250 aaKnown RBP13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 CYTH4Q9UIA0 394 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 TSC2P49815 1807 aa13.84□□□□□ -0.19
SQSTM1-201ENST00000360718 PHF2O75151 1096 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 MTA2O94776 668 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 BYSLQ13895 437 aaKnown RBP13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 TIGD5Q53EQ6 642 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 NOMO2Q5JPE7 1267 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 SEL1L2Q5TEA6 688 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 DCAF12L1Q5VU92 463 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 WSCD1Q658N2 575 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.83□□□□□ -0.25e-7■■■■■ 35
SQSTM1-201ENST00000360718 UBE2Q1Q7Z7E8 422 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 PHLDB2Q86SQ0 1253 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 SENP8Q96LD8 212 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 FAM193BQ96PV7 902 aaPredicted RBP13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 TXLNGYQ9BZA5 131 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 TBC1D13Q9NVG8 400 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 DNAJB4Q9UDY4 337 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 TIMM13Q9Y5L4 95 aaPredicted RBP13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 SCINQ9Y6U3 715 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 FNDC1Q4ZHG4 1894 aaPredicted RBP13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 ARHGEF37A1IGU5 675 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 M0QYV0 167 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 O00370 1275 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 MICAL2O94851 1124 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 PDGFRBP09619 1106 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 NUDT17P0C025 328 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 MMP8P22894 467 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 WARSP23381 471 aaKnown RBP13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 BRCC3P46736 316 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 PMS2P54278 862 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 MAGOHP61326 146 aaKnown RBP13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 RNASELQ05823 741 aaKnown RBP13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 DSC1Q08554 894 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 PTP4A2Q12974 167 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 LCLAT1Q6UWP7 414 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 JAMLQ86YT9 394 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 CNPY4Q8N129 248 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 TMEM86AQ8N2M4 240 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 MAGOHBQ96A72 148 aaKnown RBP13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 CENPTQ96BT3 561 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 PABPC3Q9H361 631 aaKnown RBP13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 SYNCQ9H7C4 482 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 PRDM5Q9NQX1 630 aaPredicted RBP13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 HESX1Q9UBX0 185 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 MTRF1LQ9UGC7 380 aaKnown RBP13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 STRIP2Q9ULQ0 834 aa13.83□□□□□ -0.2
SQSTM1-201ENST00000360718 B3GAT3O94766 335 aa13.82□□□□□ -0.2
SQSTM1-201ENST00000360718 RRM1P23921 792 aa13.82□□□□□ -0.2
SQSTM1-201ENST00000360718 IFT88Q13099 833 aa13.82□□□□□ -0.2
SQSTM1-201ENST00000360718 DENND2CQ68D51 928 aa13.82□□□□□ -0.2
SQSTM1-201ENST00000360718 CCDC121Q6ZUS5 278 aa13.82□□□□□ -0.2
SQSTM1-201ENST00000360718 CASD1Q96PB1 797 aa13.82□□□□□ -0.2
SQSTM1-201ENST00000360718 ACTR5Q9H9F9 607 aaPredicted RBP13.82□□□□□ -0.2
SQSTM1-201ENST00000360718 ZDHHC18Q9NUE0 388 aa13.82□□□□□ -0.2
SQSTM1-201ENST00000360718 FAM49BQ9NUQ9 324 aa13.82□□□□□ -0.2
SQSTM1-201ENST00000360718 PARVAQ9NVD7 372 aa13.82□□□□□ -0.2
SQSTM1-201ENST00000360718 TJP2Q9UDY2 1190 aa13.82□□□□□ -0.2
SQSTM1-201ENST00000360718 MTUS1Q9ULD2 1270 aa13.82□□□□□ -0.2
SQSTM1-201ENST00000360718 NR2E1Q9Y466 385 aa13.82□□□□□ -0.2
SQSTM1-201ENST00000360718 LTBP2Q14767 1821 aa13.82□□□□□ -0.2
SQSTM1-201ENST00000360718 HOXA2O43364 376 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 CSF2RAP15509 400 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 LHX1P48742 406 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 ZNF211Q13398 564 aaPredicted RBP13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 PPP1R26Q5T8A7 1209 aaPredicted RBP13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 KIAA0319Q5VV43 1072 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 DCLRE1AQ6PJP8 1040 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 C6orf89Q6UWU4 347 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 COLGALT2Q8IYK4 626 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 CRYBG2Q8N1P7 616 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 MIS12Q9H081 205 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 PCYOX1Q9UHG3 505 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 TSPAN16Q9UKR8 245 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 COL4A6Q14031 1691 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 ATP2C2O75185 946 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 TIMP1P01033 207 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 ODC1P11926 461 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 ACAT1P24752 427 aaKnown RBP13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 HNRNPH1P31943 449 aaKnown RBP13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 FNTAP49354 379 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 GTF2A1P52655 376 aaPredicted RBP13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 PLTPP55058 493 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 MESDQ14696 234 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 ADAT2Q7Z6V5 191 aaKnown RBP13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 METTL23Q86XA0 190 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 ALG3Q92685 438 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 P3H4Q92791 437 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 TLCD1Q96CP7 247 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 PGM2Q96G03 612 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 CABS1Q96KC9 395 aa13.81□□□□□ -0.2
SQSTM1-201ENST00000360718 FAM129AQ9BZQ8 928 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms