RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 C11orf96Q7Z7L8 435 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 FAM71DQ8N9W8 422 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 UBA3Q8TBC4 463 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 THUMPD3Q9BV44 507 aaKnown RBP6.69□□□□□ -1.34
UPF2-201ENST00000356352 CLPBQ9H078 707 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 CARD9Q9H257 536 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 EFCAB1Q9HAE3 211 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 NMRK2Q9NPI5 230 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 RGS18Q9NS28 235 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 MARCOQ9UEW3 520 aaPredicted RBP6.69□□□□□ -1.34
UPF2-201ENST00000356352 STARD13Q9Y3M8 1113 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 SDR42E2A6NKP2 422 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 ZNF839A8K0R7 811 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 M0QYT0 321 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 RAD51CO43502 376 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 LSM8O95777 96 aaKnown RBP6.69□□□□□ -1.34
UPF2-201ENST00000356352 ITGB3P05106 788 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 TCF7P36402 384 aaPredicted RBP6.69□□□□□ -1.34
UPF2-201ENST00000356352 SLC26A2P50443 739 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 PEX5P50542 639 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 BCAT1P54687 386 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 EPHB3P54753 998 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 CDC16Q13042 620 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 KPNB1Q14974 876 aaKnown RBP6.69□□□□□ -1.34
UPF2-201ENST00000356352 IRAK1BP1Q5VVH5 260 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 HDDC2Q7Z4H3 204 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 MS4A14Q96JA4 679 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 RPRD1AQ96P16 312 aaPredicted RBP6.69□□□□□ -1.34
UPF2-201ENST00000356352 KLHL28Q9NXS3 571 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 WHRNQ9P202 907 aa6.69□□□□□ -1.34
UPF2-201ENST00000356352 MAGEA13PA6NCF6 341 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 CCT8L1PA6NM43 557 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 DCDC2CA8MYV0 355 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 NFIBO00712 420 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 ICAM1P05362 532 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 URODP06132 367 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 GTF2E2P29084 291 aaKnown RBP6.68□□□□□ -1.34
UPF2-201ENST00000356352 CTCFP49711 727 aaPredicted RBP6.68□□□□□ -1.34
UPF2-201ENST00000356352 GSTA3Q16772 222 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 ARMCX4Q5H9R4 360 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 PRMT9Q6P2P2 845 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 MPZL3Q6UWV2 235 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 GPR141Q7Z602 305 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 CDK20Q8IZL9 346 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 GALNT4Q8N4A0 578 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 PCSK9Q8NBP7 692 aaKnown RBP6.68□□□□□ -1.34
UPF2-201ENST00000356352 ANKRD49Q8WVL7 239 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 SPIRE2Q8WWL2 714 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 JADE3Q92613 823 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 FBXO32Q969P5 355 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 MAGEB18Q96M61 343 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 ZSWIM1Q9BR11 485 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 ENTPD7Q9NQZ7 604 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 CHST12Q9NRB3 414 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 ABI2Q9NYB9 513 aaPredicted RBP6.68□□□□□ -1.34
UPF2-201ENST00000356352 LZTS1Q9Y250 596 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 KLHL20Q9Y2M5 609 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 ALG6Q9Y672 507 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 ZMYM2Q9UBW7 1377 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 MAGEB16A2A368 324 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 TTLL13PA6NNM8 815 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 PDZK1P1A8MUH7 402 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 OGTO15294 1046 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 CYP11B2P19099 503 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 BRD2P25440 801 aaKnown RBP6.68□□□□□ -1.34
UPF2-201ENST00000356352 PPP2R1BP30154 601 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 NUDT2P50583 147 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 PRKAA2P54646 552 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 RPS7P62081 194 aaKnown RBP6.68□□□□□ -1.34
UPF2-201ENST00000356352 ANGEL2Q5VTE6 544 aaKnown RBP6.68□□□□□ -1.34
UPF2-201ENST00000356352 REPS1Q96D71 796 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 MYOZ2Q9NPC6 264 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 RRN3Q9NYV6 651 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 TUBE1Q9UJT0 475 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 USP31Q70CQ4 1352 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 SPATA31A6Q5VVP1 1343 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 MGAT4DA6NG13 374 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 USP27XA6NNY8 438 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 TRIM49D1C9J1S8 452 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 H0YC42 278 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 ZNF185O15231 689 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 FOXN1O15353 648 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 AP1G2O75843 785 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 TFRCP02786 760 aaKnown RBP6.68□□□□□ -1.34
UPF2-201ENST00000356352 MPOP05164 745 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 SUPT20HL2P0C7V6 817 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 PTPN3P26045 913 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 GCLCP48506 637 aaPredicted RBP6.68□□□□□ -1.34
UPF2-201ENST00000356352 RAB27AP51159 221 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 MCL1Q07820 350 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 C1DQ13901 141 aaKnown RBP6.68□□□□□ -1.34
UPF2-201ENST00000356352 SYCP2LQ5T4T6 812 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 SLC30A9Q6PML9 568 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 SLC13A5Q86YT5 568 aaPredicted RBP6.68□□□□□ -1.34
UPF2-201ENST00000356352 DPP10Q8N608 796 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 BLOC1S5Q8TDH9 187 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 IGDCC4Q8TDY8 1250 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 STARD8Q92502 1023 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 ERGIC2Q96RQ1 377 aa6.68□□□□□ -1.34
UPF2-201ENST00000356352 MROH8Q9H579 483 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms