RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 DPF3Q92784 378 aa18.67■□□□□ 0.58
COL18A1-202ENST00000355480 CCDC134Q9H6E4 229 aa18.67■□□□□ 0.58
COL18A1-202ENST00000355480 ZC4H2Q9NQZ6 224 aa18.67■□□□□ 0.58
COL18A1-202ENST00000355480 ZNF286BP0CG31 522 aa18.66■□□□□ 0.58
COL18A1-202ENST00000355480 VCLP18206 1134 aa18.66■□□□□ 0.58
COL18A1-202ENST00000355480 LHX1P48742 406 aa18.66■□□□□ 0.58
COL18A1-202ENST00000355480 NCKAP1LP55160 1127 aa18.66■□□□□ 0.58
COL18A1-202ENST00000355480 NBPF12Q5TAG4 269 aaPredicted RBP18.66■□□□□ 0.58
COL18A1-202ENST00000355480 PCNX4Q63HM2 1172 aa18.66■□□□□ 0.58
COL18A1-202ENST00000355480 COPS7BQ9H9Q2 264 aaPredicted RBP18.66■□□□□ 0.58
COL18A1-202ENST00000355480 EXOSC4Q9NPD3 245 aaKnown RBP18.66■□□□□ 0.58
COL18A1-202ENST00000355480 MORC2Q9Y6X9 1032 aaPredicted RBP18.66■□□□□ 0.58
COL18A1-202ENST00000355480 RGL2O15211 777 aa18.66■□□□□ 0.58
COL18A1-202ENST00000355480 EIF3HO15372 352 aaKnown RBP eCLIP18.66■□□□□ 0.585e-8■□□□□ 10.3
COL18A1-202ENST00000355480 RHOCP08134 193 aa18.66■□□□□ 0.58
COL18A1-202ENST00000355480 DNAJB2P25686 324 aa18.66■□□□□ 0.58
COL18A1-202ENST00000355480 PMS1P54277 932 aaKnown RBP18.66■□□□□ 0.58
COL18A1-202ENST00000355480 TXNRD3Q86VQ6 643 aa18.66■□□□□ 0.58
COL18A1-202ENST00000355480 ELOA2Q8IYF1 753 aaPredicted RBP18.66■□□□□ 0.58
COL18A1-202ENST00000355480 RIN2Q8WYP3 895 aaPredicted RBP18.66■□□□□ 0.58
COL18A1-202ENST00000355480 TADA1Q96BN2 335 aa18.66■□□□□ 0.58
COL18A1-202ENST00000355480 THAP11Q96EK4 314 aa18.66■□□□□ 0.58
COL18A1-202ENST00000355480 ZIM3Q96PE6 472 aa18.66■□□□□ 0.58
COL18A1-202ENST00000355480 CARD9Q9H257 536 aa18.66■□□□□ 0.58
COL18A1-202ENST00000355480 TMX2Q9Y320 296 aa18.66■□□□□ 0.58
COL18A1-202ENST00000355480 A0A087WZ62 844 aa18.66■□□□□ 0.58
COL18A1-202ENST00000355480 PLEKP08567 350 aaPredicted RBP18.66■□□□□ 0.58
COL18A1-202ENST00000355480 TRPC1P48995 793 aa18.66■□□□□ 0.58
COL18A1-202ENST00000355480 C10orf53Q8N6V4 93 aa18.66■□□□□ 0.58
COL18A1-202ENST00000355480 POP1Q99575 1024 aaKnown RBP18.66■□□□□ 0.58
COL18A1-202ENST00000355480 OSMRQ99650 979 aa18.66■□□□□ 0.58
COL18A1-202ENST00000355480 FDXACB1Q9BRP7 624 aaPredicted RBP18.66■□□□□ 0.58
COL18A1-202ENST00000355480 FRMD8P1Q9BZ68 369 aaPredicted RBP18.66■□□□□ 0.58
COL18A1-202ENST00000355480 RPLP2P05387 115 aaKnown RBP18.65■□□□□ 0.58
COL18A1-202ENST00000355480 CYP11B1P15538 503 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 SLC26A2P50443 739 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 RHOAP61586 193 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 TRIP10Q15642 601 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 KAT2BQ92831 832 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 THUMPD3Q9BV44 507 aaKnown RBP18.65■□□□□ 0.58
COL18A1-202ENST00000355480 UBXN6Q9BZV1 441 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 CIPCQ9C0C6 399 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 CASTOR2A6NHX0 329 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 FBXO21O94952 628 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 CNTN1Q12860 1018 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 GMCL1P1Q8NEA9 526 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 TUBGCP3Q96CW5 907 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 SEC16BQ96JE7 1060 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.65■□□□□ 0.58
COL18A1-202ENST00000355480 NFIBO00712 420 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 SKAP2O75563 359 aaPredicted RBP18.65■□□□□ 0.58
COL18A1-202ENST00000355480 DARSP14868 501 aaKnown RBP18.65■□□□□ 0.58
COL18A1-202ENST00000355480 TMC7Q7Z402 723 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 SAMD3Q8N6K7 520 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 ATG4AQ8WYN0 398 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 GMCL1Q96IK5 515 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 TSEN34Q9BSV6 310 aaKnown RBP18.65■□□□□ 0.58
COL18A1-202ENST00000355480 ERCC6L2Q5T890 1561 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 NEXMIFQ5QGS0 1516 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 WEE1P30291 646 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 GIT2Q14161 759 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 P3H2Q8IVL5 708 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 ILKAPQ9H0C8 392 aaPredicted RBP18.65■□□□□ 0.58
COL18A1-202ENST00000355480 MAN1C1Q9NR34 630 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 DDX28Q9NUL7 540 aaKnown RBP18.65■□□□□ 0.58
COL18A1-202ENST00000355480 GOLGA8TH3BQL2 631 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 ITGALP20701 1170 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 S100A5P33763 92 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 SLC16A1P53985 500 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 SLC9A5Q14940 896 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 TRIM60Q495X7 471 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 MYO1HQ8N1T3 1032 aa18.65■□□□□ 0.58
COL18A1-202ENST00000355480 RUVBL2Q9Y230 463 aaKnown RBP18.65■□□□□ 0.58
COL18A1-202ENST00000355480 DYNC1I2Q13409 638 aaKnown RBP18.64■□□□□ 0.58
COL18A1-202ENST00000355480 TFDP3Q5H9I0 405 aa18.64■□□□□ 0.58
COL18A1-202ENST00000355480 TRPM8Q7Z2W7 1104 aa18.64■□□□□ 0.58
COL18A1-202ENST00000355480 FAM131BQ86XD5 332 aa18.64■□□□□ 0.58
COL18A1-202ENST00000355480 ARID3BQ8IVW6 561 aaPredicted RBP18.64■□□□□ 0.58
COL18A1-202ENST00000355480 PHACTR4Q8IZ21 702 aa18.64■□□□□ 0.58
COL18A1-202ENST00000355480 KRT78Q8N1N4 520 aa18.64■□□□□ 0.58
COL18A1-202ENST00000355480 FAM111AQ96PZ2 611 aa18.64■□□□□ 0.58
COL18A1-202ENST00000355480 CLPBQ9H078 707 aa18.64■□□□□ 0.58
COL18A1-202ENST00000355480 CYTH3O43739 400 aa18.64■□□□□ 0.57
COL18A1-202ENST00000355480 SYNCRIPO60506 623 aaKnown RBP18.64■□□□□ 0.57
COL18A1-202ENST00000355480 TGFB2P61812 414 aa18.64■□□□□ 0.57
COL18A1-202ENST00000355480 PLIN5Q00G26 463 aa18.64■□□□□ 0.57
COL18A1-202ENST00000355480 HERC6Q8IVU3 1022 aa18.64■□□□□ 0.57
COL18A1-202ENST00000355480 FAM136AQ96C01 138 aa18.64■□□□□ 0.57
COL18A1-202ENST00000355480 VPS50Q96JG6 964 aa18.64■□□□□ 0.57
COL18A1-202ENST00000355480 UBE2OQ9C0C9 1292 aaKnown RBP18.64■□□□□ 0.57
COL18A1-202ENST00000355480 ASCC2Q9H1I8 757 aaPredicted RBP18.64■□□□□ 0.57
COL18A1-202ENST00000355480 RAD18Q9NS91 495 aa18.64■□□□□ 0.57
COL18A1-202ENST00000355480 SDR42E2A6NKP2 422 aa18.64■□□□□ 0.57
COL18A1-202ENST00000355480 DAB1O75553 588 aa18.64■□□□□ 0.57
COL18A1-202ENST00000355480 GPC1P35052 558 aa18.64■□□□□ 0.57
COL18A1-202ENST00000355480 PCYT1AP49585 367 aa18.64■□□□□ 0.57
COL18A1-202ENST00000355480 PWP1Q13610 501 aa18.64■□□□□ 0.57
COL18A1-202ENST00000355480 KHDRBS2Q5VWX1 349 aaKnown RBP18.64■□□□□ 0.57
COL18A1-202ENST00000355480 WDR49Q8IV35 697 aa18.64■□□□□ 0.57
COL18A1-202ENST00000355480 SCN3BQ9NY72 215 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms