RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 HIST1H2ADP20671 130 aa17.06■□□□□ 0.32
SMARCA4-201ENST00000344626 BCAS4Q8TDM0 211 aa17.06■□□□□ 0.32
SMARCA4-201ENST00000344626 HIST1H2AHQ96KK5 128 aa17.06■□□□□ 0.32
SMARCA4-201ENST00000344626 HIST1H2AJQ99878 128 aa17.06■□□□□ 0.32
SMARCA4-201ENST00000344626 H2AFJQ9BTM1 129 aa17.06■□□□□ 0.32
SMARCA4-201ENST00000344626 TPX2Q9ULW0 747 aaKnown RBP17.06■□□□□ 0.32
SMARCA4-201ENST00000344626 GIT1Q9Y2X7 761 aa17.06■□□□□ 0.32
SMARCA4-201ENST00000344626 PCSK7Q16549 785 aa17.06■□□□□ 0.32
SMARCA4-201ENST00000344626 SMTNL2Q2TAL5 461 aa17.06■□□□□ 0.32
SMARCA4-201ENST00000344626 RAB23Q9ULC3 237 aa17.06■□□□□ 0.32
SMARCA4-201ENST00000344626 PKP3Q9Y446 797 aa17.06■□□□□ 0.32
SMARCA4-201ENST00000344626 SEC31AO94979 1220 aaKnown RBP17.06■□□□□ 0.32
SMARCA4-201ENST00000344626 IMPG1Q17R60 797 aa17.06■□□□□ 0.32
SMARCA4-201ENST00000344626 GPATCH11Q8N954 259 aa17.06■□□□□ 0.32
SMARCA4-201ENST00000344626 APBB2Q92870 758 aa17.06■□□□□ 0.32
SMARCA4-201ENST00000344626 CDT1Q9H211 546 aa17.06■□□□□ 0.32
SMARCA4-201ENST00000344626 SUN2Q9UH99 717 aa17.06■□□□□ 0.32
SMARCA4-201ENST00000344626 PLIN4Q96Q06 1357 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 TSPAN3O60637 253 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 TYK2P29597 1187 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 GEMIN4P57678 1058 aaKnown RBP17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 GTF2BQ00403 316 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 CASP8Q14790 479 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 ANO5Q75V66 913 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 WDR75Q8IWA0 830 aaKnown RBP17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 SDCCAG3Q96C92 435 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 TMEM247A6NEH6 219 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 F8VZ95 297 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 LZTS3O60299 673 aaPredicted RBP17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 TMPRSS15P98073 1019 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 EEF1DP3Q658K8 133 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 RGL4Q8IZJ4 473 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 SPATA4Q8NEY3 305 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 HAUS8Q9BT25 410 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 NXF3Q9H4D5 531 aaKnown RBP17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 TISP43B9A030 160 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 LYPLA2O95372 231 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 RBP3P10745 1247 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 RPL9P32969 192 aaKnown RBP17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 ABHD15Q6UXT9 468 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 FAM172AQ8WUF8 416 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.05■□□□□ 0.323e-6■■■■■ 38.6
SMARCA4-201ENST00000344626 FRMD8Q9BZ67 464 aaPredicted RBP17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 THAP2Q9H0W7 228 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 CCDC78A2IDD5 438 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 CCDC160A6NGH7 325 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 CCNE2O96020 404 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 DDX5P17844 614 aaKnown RBP17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 ARF4P18085 180 aaPredicted RBP17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 GEMP55040 296 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 TRIM60Q495X7 471 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 SLC2A14Q8TDB8 520 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 XPO6Q96QU8 1125 aaKnown RBP17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 UBXN6Q9BZV1 441 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 TSPAN16Q9UKR8 245 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 SLC27A5Q9Y2P5 690 aa17.05■□□□□ 0.32
SMARCA4-201ENST00000344626 WDR91A4D1P6 747 aa17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 RHOCP08134 193 aa17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 CCR1P32246 355 aa17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 MRPS25P82663 173 aaKnown RBP17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 ZKSCAN8Q15776 578 aaPredicted RBP17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 LDLRAD1Q5T700 205 aa17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 ETNPPLQ8TBG4 499 aa17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 SMG7Q92540 1137 aaKnown RBP17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 TTC17Q96AE7 1141 aa17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 DNAJC7Q99615 494 aa17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 AMACRQ9UHK6 382 aa17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 TOPAZ1Q8N9V7 1692 aa17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 HDCP19113 662 aa17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 STIP1P31948 543 aaKnown RBP17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 OCRLQ01968 901 aa17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 UNC93AQ86WB7 457 aa17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 CLEC4DQ8WXI8 215 aa17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 TEPSINQ96N21 525 aa17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 FDFT1P37268 417 aa17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 FAM131BQ86XD5 332 aa17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 CYTH2Q99418 400 aa17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 ANKRD63C9JTQ0 380 aa17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 ZNF557Q8N988 423 aaPredicted RBP17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 SERPINB11Q96P15 392 aa17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 DCLK3Q9C098 648 aa17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 ZCCHC17Q9NP64 241 aaKnown RBP17.04■□□□□ 0.32
SMARCA4-201ENST00000344626 MYO1DO94832 1006 aa17.03■□□□□ 0.32
SMARCA4-201ENST00000344626 NR1D1P20393 614 aa17.03■□□□□ 0.32
SMARCA4-201ENST00000344626 BRCC3P46736 316 aa17.03■□□□□ 0.32
SMARCA4-201ENST00000344626 C1QBPQ07021 282 aaKnown RBP17.03■□□□□ 0.32
SMARCA4-201ENST00000344626 STAT4Q14765 748 aa17.03■□□□□ 0.32
SMARCA4-201ENST00000344626 EPM2AIP1Q7L775 607 aaPredicted RBP17.03■□□□□ 0.32
SMARCA4-201ENST00000344626 IPMKQ8NFU5 416 aa17.03■□□□□ 0.32
SMARCA4-201ENST00000344626 VPS9D1Q9Y2B5 631 aa17.03■□□□□ 0.32
SMARCA4-201ENST00000344626 ICAM3P32942 547 aa17.03■□□□□ 0.32
SMARCA4-201ENST00000344626 CLEC16AQ2KHT3 1053 aa17.03■□□□□ 0.32
SMARCA4-201ENST00000344626 PTPRN2Q92932 1015 aa17.03■□□□□ 0.32
SMARCA4-201ENST00000344626 XPO7Q9UIA9 1087 aaKnown RBP17.03■□□□□ 0.32
SMARCA4-201ENST00000344626 SLC13A4Q9UKG4 626 aa17.03■□□□□ 0.32
SMARCA4-201ENST00000344626 LRRIQ3A6PVS8 624 aaPredicted RBP17.03■□□□□ 0.32
SMARCA4-201ENST00000344626 GSTA4O15217 222 aa17.03■□□□□ 0.32
SMARCA4-201ENST00000344626 SPAG6O75602 509 aa17.03■□□□□ 0.32
SMARCA4-201ENST00000344626 GLUD2P49448 558 aa17.03■□□□□ 0.32
SMARCA4-201ENST00000344626 ST3GAL1Q11201 340 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms