RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 FAM47DPA6NHR8 397 aa20.26■□□□□ 0.83
COL9A3-201ENST00000343916 BTBD19C9JJ37 291 aa20.26■□□□□ 0.83
COL9A3-201ENST00000343916 RASSF9O75901 435 aa20.26■□□□□ 0.83
COL9A3-201ENST00000343916 NPTXRO95502 500 aa20.26■□□□□ 0.83
COL9A3-201ENST00000343916 GOLGA7BQ2TAP0 167 aa20.26■□□□□ 0.83
COL9A3-201ENST00000343916 PMF1Q6P1K2 205 aa20.26■□□□□ 0.83
COL9A3-201ENST00000343916 LCLAT1Q6UWP7 414 aa20.26■□□□□ 0.83
COL9A3-201ENST00000343916 ACOT1Q86TX2 421 aa20.26■□□□□ 0.83
COL9A3-201ENST00000343916 LPIN3Q9BQK8 851 aa20.26■□□□□ 0.83
COL9A3-201ENST00000343916 TRABDQ9H4I3 376 aa20.26■□□□□ 0.83
COL9A3-201ENST00000343916 SNTG2Q9NY99 539 aa20.26■□□□□ 0.83
COL9A3-201ENST00000343916 USP15Q9Y4E8 981 aaPredicted RBP20.26■□□□□ 0.83
COL9A3-201ENST00000343916 ADCY6O43306 1168 aa20.25■□□□□ 0.83
COL9A3-201ENST00000343916 FOXN2P32314 431 aa20.25■□□□□ 0.83
COL9A3-201ENST00000343916 DPP9Q86TI2 863 aa20.25■□□□□ 0.83
COL9A3-201ENST00000343916 PYROXD1Q8WU10 500 aa20.25■□□□□ 0.83
COL9A3-201ENST00000343916 P3H4Q92791 437 aa20.25■□□□□ 0.83
COL9A3-201ENST00000343916 GPATCH2LQ9NWQ4 482 aa20.25■□□□□ 0.83
COL9A3-201ENST00000343916 NME7Q9Y5B8 376 aa20.25■□□□□ 0.83
COL9A3-201ENST00000343916 PLXNB2O15031 1838 aa20.25■□□□□ 0.83
COL9A3-201ENST00000343916 A0A1W2PPM1 405 aa20.25■□□□□ 0.83
COL9A3-201ENST00000343916 MCF2LO15068 1137 aa20.25■□□□□ 0.83
COL9A3-201ENST00000343916 MAP3K6O95382 1288 aa20.25■□□□□ 0.83
COL9A3-201ENST00000343916 MAP2K2P36507 400 aa20.25■□□□□ 0.83
COL9A3-201ENST00000343916 SCYL2Q6P3W7 929 aa20.25■□□□□ 0.83
COL9A3-201ENST00000343916 FAM47EQ6ZV65 393 aa20.25■□□□□ 0.83
COL9A3-201ENST00000343916 PCGF5Q86SE9 256 aa20.25■□□□□ 0.83
COL9A3-201ENST00000343916 EMID1Q96A84 441 aaPredicted RBP20.25■□□□□ 0.83
COL9A3-201ENST00000343916 CNPY3Q9BT09 278 aa20.25■□□□□ 0.83
COL9A3-201ENST00000343916 MAK16Q9BXY0 300 aaKnown RBP20.25■□□□□ 0.83
COL9A3-201ENST00000343916 EIF2AQ9BY44 585 aaKnown RBP20.25■□□□□ 0.83
COL9A3-201ENST00000343916 CDHR5Q9HBB8 845 aa20.25■□□□□ 0.83
COL9A3-201ENST00000343916 DNAH12Q6ZR08 3092 aa20.25■□□□□ 0.83
COL9A3-201ENST00000343916 COL1A2P08123 1366 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 RBM47A0AV96 593 aaKnown RBP20.24■□□□□ 0.83
COL9A3-201ENST00000343916 HGSO14964 777 aaPredicted RBP20.24■□□□□ 0.83
COL9A3-201ENST00000343916 HCRTO43612 131 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 MMP3P08254 477 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 GHRP10912 638 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 IBSPP21815 317 aaPredicted RBP20.24■□□□□ 0.83
COL9A3-201ENST00000343916 HOXA11P31270 313 aaPredicted RBP20.24■□□□□ 0.83
COL9A3-201ENST00000343916 PCK1P35558 622 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 ACAP1Q15027 740 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 CGB2Q6NT52 195 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 PPP1R21Q6ZMI0 780 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 C3orf62Q6ZUJ4 267 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 TTC30AQ86WT1 665 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 TDRPQ86YL5 185 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 SCUBE3Q8IX30 993 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 FBXO36Q8NEA4 188 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 SPOCK2Q92563 424 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 MAGEB18Q96M61 343 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 RSAD1Q9HA92 442 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 UBN1Q9NPG3 1134 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.24■□□□□ 0.836e-8■■■■■ 41.8
COL9A3-201ENST00000343916 TUBGCP4Q9UGJ1 667 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 XPO7Q9UIA9 1087 aaKnown RBP20.24■□□□□ 0.83
COL9A3-201ENST00000343916 ARL4CP56559 192 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 DPYSL3Q14195 570 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 BBS9Q3SYG4 887 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 C1orf228Q6PIY5 440 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 LRRN4Q8WUT4 740 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 C18orf25Q96B23 403 aaPredicted RBP20.24■□□□□ 0.83
COL9A3-201ENST00000343916 L3MBTL3Q96JM7 780 aaPredicted RBP20.24■□□□□ 0.83
COL9A3-201ENST00000343916 MS4A4AQ96JQ5 239 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 B3GNT5Q9BYG0 378 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 NGRNQ9NPE2 291 aaKnown RBP20.24■□□□□ 0.83
COL9A3-201ENST00000343916 RABGEF1Q9UJ41 708 aa20.24■□□□□ 0.83
COL9A3-201ENST00000343916 PRPSAP2O60256 369 aa20.23■□□□□ 0.83
COL9A3-201ENST00000343916 TAC1P20366 129 aa20.23■□□□□ 0.83
COL9A3-201ENST00000343916 RPA3P35244 121 aaPredicted RBP20.23■□□□□ 0.83
COL9A3-201ENST00000343916 GRM5P41594 1212 aa20.23■□□□□ 0.83
COL9A3-201ENST00000343916 KYAT1Q16773 422 aa20.23■□□□□ 0.83
COL9A3-201ENST00000343916 CCDC14Q49A88 953 aa20.23■□□□□ 0.83
COL9A3-201ENST00000343916 ZC3H12AQ5D1E8 599 aaKnown RBP20.23■□□□□ 0.83
COL9A3-201ENST00000343916 SPATA21Q7Z572 469 aa20.23■□□□□ 0.83
COL9A3-201ENST00000343916 GBA2Q9HCG7 927 aaPredicted RBP20.23■□□□□ 0.83
COL9A3-201ENST00000343916 GRID1Q9ULK0 1009 aa20.23■□□□□ 0.83
COL9A3-201ENST00000343916 SLC12A4Q9UP95 1085 aa20.23■□□□□ 0.83
COL9A3-201ENST00000343916 CCL15-CCL14A0A0B4J2E2 113 aa20.22■□□□□ 0.83
COL9A3-201ENST00000343916 CCL15Q16663 113 aa20.22■□□□□ 0.83
COL9A3-201ENST00000343916 DARS2Q6PI48 645 aaKnown RBP20.22■□□□□ 0.83
COL9A3-201ENST00000343916 GPR142Q7Z601 462 aa20.22■□□□□ 0.83
COL9A3-201ENST00000343916 FUKQ8N0W3 1084 aa20.22■□□□□ 0.83
COL9A3-201ENST00000343916 OR6J1Q8NGC5 347 aa20.22■□□□□ 0.83
COL9A3-201ENST00000343916 SGSM3Q96HU1 749 aa20.22■□□□□ 0.83
COL9A3-201ENST00000343916 FRMD8P1Q9BZ68 369 aaPredicted RBP20.22■□□□□ 0.83
COL9A3-201ENST00000343916 CHUKO15111 745 aa20.22■□□□□ 0.83
COL9A3-201ENST00000343916 SUN1O94901 812 aa20.22■□□□□ 0.83
COL9A3-201ENST00000343916 ENDOD1O94919 500 aa20.22■□□□□ 0.83
COL9A3-201ENST00000343916 UBOX5O94941 541 aa20.22■□□□□ 0.83
COL9A3-201ENST00000343916 ASMTLO95671 621 aa20.22■□□□□ 0.83
COL9A3-201ENST00000343916 FBF1Q8TES7 1133 aa20.22■□□□□ 0.83
COL9A3-201ENST00000343916 THOC1Q96FV9 657 aaKnown RBP20.22■□□□□ 0.83
COL9A3-201ENST00000343916 SMC6Q96SB8 1091 aa20.22■□□□□ 0.83
COL9A3-201ENST00000343916 GEMIN4P57678 1058 aaKnown RBP20.21■□□□□ 0.83
COL9A3-201ENST00000343916 IL9RQ01113 521 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 ROR1Q01973 937 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 NOMO1Q15155 1222 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 DUSP28Q4G0W2 176 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms