RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 CCT8L1PA6NM43 557 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 MMP3P08254 477 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 HIC1Q14526 733 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 MORF4L2Q15014 288 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 SMAD1Q15797 465 aaKnown RBP10.82□□□□□ -0.68
LIMA1-201ENST00000341247 ZNF618Q5T7W0 954 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 C3orf62Q6ZUJ4 267 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 BBS12Q6ZW61 710 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 TTC30AQ86WT1 665 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 FBXO36Q8NEA4 188 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 NPLOC4Q8TAT6 608 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 NDRG1Q92597 394 aaKnown RBP10.82□□□□□ -0.68
LIMA1-201ENST00000341247 NSRP1Q9H0G5 558 aaKnown RBP10.82□□□□□ -0.68
LIMA1-201ENST00000341247 ALG13Q9NP73 1137 aaKnown RBP10.82□□□□□ -0.68
LIMA1-201ENST00000341247 XPO7Q9UIA9 1087 aaKnown RBP10.82□□□□□ -0.68
LIMA1-201ENST00000341247 GJD2Q9UKL4 321 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 DRG1Q9Y295 367 aaKnown RBP10.82□□□□□ -0.68
LIMA1-201ENST00000341247 NME7Q9Y5B8 376 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 SCN1AP35498 2009 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 A0A1B0GUA9 196 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 FSBPO95073 299 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 PFKMP08237 780 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 LCP1P13796 627 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 CCDC130P13994 396 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 GPX6P59796 221 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 DNAJC3Q13217 504 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 POLNQ7Z5Q5 900 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 PALM2Q8IXS6 379 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 CCHCR1Q8TD31 782 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 CCT6BQ92526 530 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 VTA1Q9NP79 307 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 WDR35Q9P2L0 1181 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 CPA4Q9UI42 421 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 A8MXQ7 604 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 CA4P22748 312 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 FOXN2P32314 431 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 RABGGTBP53611 331 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 ACVR2BQ13705 512 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 YTHDF3Q7Z739 585 aaKnown RBP10.82□□□□□ -0.68
LIMA1-201ENST00000341247 PIGWQ7Z7B1 504 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 FAM172AQ8WUF8 416 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 DNAJB3Q8WWF6 145 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 P3H4Q92791 437 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 MCRS1Q96EZ8 462 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 SLC40A1Q9NP59 571 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 SLCO1B3Q9NPD5 702 aa10.82□□□□□ -0.68
LIMA1-201ENST00000341247 CLUHO75153 1309 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 SNX3O60493 162 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 HMGCRP04035 888 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 HOXA11P31270 313 aaPredicted RBP10.81□□□□□ -0.68
LIMA1-201ENST00000341247 RPA3P35244 121 aaPredicted RBP10.81□□□□□ -0.68
LIMA1-201ENST00000341247 WDR4P57081 412 aaKnown RBP10.81□□□□□ -0.68
LIMA1-201ENST00000341247 DRICH1Q6PGQ1 229 aaPredicted RBP10.81□□□□□ -0.68
LIMA1-201ENST00000341247 LINC01465Q8N7H1 131 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 SHCBP1Q8NEM2 672 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 FBF1Q8TES7 1133 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 MAML1Q92585 1016 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 MAML3Q96JK9 1138 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 L3MBTL3Q96JM7 780 aaPredicted RBP10.81□□□□□ -0.68
LIMA1-201ENST00000341247 RNF39Q9H2S5 420 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 CYP3A43Q9HB55 503 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 PIN4Q9Y237 131 aaKnown RBP10.81□□□□□ -0.68
LIMA1-201ENST00000341247 C2CD4BA6NLJ0 364 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 LMO2P25791 158 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 ATICP31939 592 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 MNAT1P51948 309 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 ZNF143P52747 638 aaPredicted RBP10.81□□□□□ -0.68
LIMA1-201ENST00000341247 BEX3Q00994 111 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 DGKDQ16760 1214 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 FAM187BQ17R55 369 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 CCDC14Q49A88 953 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 IGDCC3Q8IVU1 814 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 PPIL6Q8IXY8 311 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 WDR83Q9BRX9 315 aaKnown RBP10.81□□□□□ -0.68
LIMA1-201ENST00000341247 NFKBIZQ9BYH8 718 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 ITGA11Q9UKX5 1188 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 FAM47DPA6NHR8 397 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 KCNN4O15554 427 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 RECQL4O94761 1208 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 UBOX5O94941 541 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 ARL4CP56559 192 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 YWHAGP61981 247 aaKnown RBP eCLIP10.81□□□□□ -0.68
LIMA1-201ENST00000341247 ROR1Q01973 937 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 ARHGEF18Q6ZSZ5 1173 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 TRPM8Q7Z2W7 1104 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 TBC1D1Q86TI0 1168 aaPredicted RBP10.81□□□□□ -0.68
LIMA1-201ENST00000341247 TRABD2AQ86V40 505 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 CKAP2Q8WWK9 683 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 TINF2Q9BSI4 451 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 CNPY3Q9BT09 278 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 HESX1Q9UBX0 185 aa10.81□□□□□ -0.68
LIMA1-201ENST00000341247 APOC4-APOC2K7ER74 178 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 ALOX15BO15296 676 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 CPP00450 1065 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 APOC2P02655 101 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 CYP2C9P11712 490 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 DPYSL3Q14195 570 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 CMASQ8NFW8 434 aaPredicted RBP10.8□□□□□ -0.68
LIMA1-201ENST00000341247 FNIP1Q8TF40 1166 aa10.8□□□□□ -0.68
LIMA1-201ENST00000341247 TMEM40Q8WWA1 233 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms