RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ZNF618Q5T7W0 954 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 DENND5BQ6ZUT9 1274 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 C1orf54Q8WWF1 131 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 USP17L7P0C7H9 530 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 ZNF135P52742 658 aaPredicted RBP10.57□□□□□ -0.72
USP54-201ENST00000339859 EIF3BP55884 814 aaKnown RBP10.57□□□□□ -0.72
USP54-201ENST00000339859 IL9RQ01113 521 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 NUGGCQ68CJ6 796 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 ARHGEF19Q8IW93 802 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 LRRC8CQ8TDW0 803 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 TMEM161AQ9NX61 479 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 NPR3P17342 541 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 COMTP21964 271 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 RHOAP61586 193 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 POU5F1BQ06416 359 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 TCF25Q9BQ70 676 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 TMEM175Q9BSA9 504 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 ARHGAP39Q9C0H5 1083 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 POPDC2Q9HBU9 364 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 ASTN1O14525 1302 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 SMAPO00193 183 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 SYN1P17600 705 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 FNDC3BQ53EP0 1204 aaKnown RBP10.57□□□□□ -0.72
USP54-201ENST00000339859 ATAT1Q5SQI0 421 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 B3GALNT2Q8NCR0 500 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 PIK3R5Q8WYR1 880 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 TRIB2Q92519 343 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 SNX19Q92543 992 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 DNAJC19Q96DA6 116 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 AP4E1Q9UPM8 1137 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 GOLGA8MH3BSY2 632 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 PHF2O75151 1096 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 POLR2EP19388 210 aaKnown RBP10.57□□□□□ -0.72
USP54-201ENST00000339859 FDFT1P37268 417 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 YWHAZP63104 245 aaKnown RBP10.57□□□□□ -0.72
USP54-201ENST00000339859 SMTNL2Q2TAL5 461 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 NAPEPLDQ6IQ20 393 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 RETSATQ6NUM9 610 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 SH3RF1Q7Z6J0 888 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 SAMD11Q96NU1 681 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 NSMCE4AQ9NXX6 385 aa10.57□□□□□ -0.72
USP54-201ENST00000339859 ATP9BO43861 1147 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 LZTS3O60299 673 aaPredicted RBP10.56□□□□□ -0.72
USP54-201ENST00000339859 GYPCP04921 128 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 ADRB2P07550 413 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 MAP4P27816 1152 aaKnown RBP10.56□□□□□ -0.72
USP54-201ENST00000339859 STX1BP61266 288 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 SLC6A3Q01959 620 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 IRF5Q13568 498 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 MAMDC4Q6UXC1 1216 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 C12orf56Q8IXR9 622 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 C4orf32Q8N8J7 132 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 SPPL2BQ8TCT7 592 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 SCLYQ96I15 445 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 GDAP1L1Q96MZ0 367 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 ADAM28Q9UKQ2 775 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 SNAI1O95863 264 aaPredicted RBP10.56□□□□□ -0.72
USP54-201ENST00000339859 C1QTNF8P60827 252 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 ARID5BQ14865 1188 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 PCSK7Q16549 785 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 ACBD5Q5T8D3 534 aaPredicted RBP10.56□□□□□ -0.72
USP54-201ENST00000339859 ARMC6Q6NXE6 501 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 KDELC2Q7Z4H8 507 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 SUDS3Q9H7L9 328 aaPredicted RBP10.56□□□□□ -0.72
USP54-201ENST00000339859 TTC7AQ9ULT0 858 aaPredicted RBP10.56□□□□□ -0.72
USP54-201ENST00000339859 MYH13Q9UKX3 1938 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 ATP5BP06576 529 aaKnown RBP10.56□□□□□ -0.72
USP54-201ENST00000339859 COL6A1P12109 1028 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 FXR1P51114 621 aaKnown RBP eCLIP10.56□□□□□ -0.72
USP54-201ENST00000339859 PHEXP78562 749 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 GPM6BQ13491 265 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 IZUMO3Q5VZ72 239 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 CPA6Q8N4T0 437 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 ZNF606Q8WXB4 792 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 VCPIP1Q96JH7 1222 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 FAM237AA0A1B0GTK4 181 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 CCDC151A5D8V7 595 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 RASSF10A6NK89 507 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 VCLP18206 1134 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 GTF2F1P35269 517 aaKnown RBP eCLIP10.56□□□□□ -0.722e-8■■■■■ 43.3
USP54-201ENST00000339859 ERMARDQ5T6L9 678 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 ANKRD20A3Q5VUR7 823 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 EEF1DP3Q658K8 133 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 ERAP2Q6P179 960 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 CALML6Q8TD86 181 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 C2orf15Q8WU43 125 aaKnown RBP10.56□□□□□ -0.72
USP54-201ENST00000339859 RXFP2Q8WXD0 754 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 EDEM1Q92611 657 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 DNAJC7Q99615 494 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 THAP2Q9H0W7 228 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 PACSIN2Q9UNF0 486 aaPredicted RBP10.56□□□□□ -0.72
USP54-201ENST00000339859 AAR2Q9Y312 384 aaKnown RBP10.56□□□□□ -0.72
USP54-201ENST00000339859 ARL5CA6NH57 179 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 RBM43Q6ZSC3 357 aaKnown RBP10.56□□□□□ -0.72
USP54-201ENST00000339859 SPATA18Q8TC71 538 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 EXT2Q93063 718 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 MFSD14AQ96MC6 490 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 CHP1Q99653 195 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 OSBPL8Q9BZF1 889 aa10.56□□□□□ -0.72
USP54-201ENST00000339859 SMPD4Q9NXE4 827 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms