RNA–Protein interactions for RNA: ENST00000325599.12

SHQ1-201, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHQ1, Length 2,879 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-201ENST00000325599 CYP3A5P20815 502 aa17.12■□□□□ 0.33
SHQ1-201ENST00000325599 MKRN3Q13064 507 aaKnown RBP17.12■□□□□ 0.33
SHQ1-201ENST00000325599 ZNF268Q14587 947 aaPredicted RBP17.12■□□□□ 0.33
SHQ1-201ENST00000325599 CDO1Q16878 200 aa17.12■□□□□ 0.33
SHQ1-201ENST00000325599 C15orf59Q2T9L4 293 aaPredicted RBP17.12■□□□□ 0.33
SHQ1-201ENST00000325599 BBS9Q3SYG4 887 aa17.12■□□□□ 0.33
SHQ1-201ENST00000325599 FBXO36Q8NEA4 188 aa17.12■□□□□ 0.33
SHQ1-201ENST00000325599 CMASQ8NFW8 434 aaPredicted RBP17.12■□□□□ 0.33
SHQ1-201ENST00000325599 ADPGKQ9BRR6 497 aa17.12■□□□□ 0.33
SHQ1-201ENST00000325599 PDZD7Q9H5P4 517 aa17.12■□□□□ 0.33
SHQ1-201ENST00000325599 EFR3BQ9Y2G0 817 aa17.12■□□□□ 0.33
SHQ1-201ENST00000325599 KAT6AQ92794 2004 aa17.12■□□□□ 0.33
SHQ1-201ENST00000325599 IGF2BP3O00425 579 aaKnown RBP eCLIP17.12■□□□□ 0.33
SHQ1-201ENST00000325599 PRPF4O43172 522 aaKnown RBP eCLIP17.12■□□□□ 0.33
SHQ1-201ENST00000325599 RBP3P10745 1247 aa17.12■□□□□ 0.33
SHQ1-201ENST00000325599 KRT4P19013 534 aa17.12■□□□□ 0.33
SHQ1-201ENST00000325599 RPS6KA3P51812 740 aa17.12■□□□□ 0.33
SHQ1-201ENST00000325599 BASP1P80723 227 aaKnown RBP17.12■□□□□ 0.33
SHQ1-201ENST00000325599 NR1H3Q13133 447 aa17.12■□□□□ 0.33
SHQ1-201ENST00000325599 C12orf29Q8N999 325 aa17.12■□□□□ 0.33
SHQ1-201ENST00000325599 SPATA18Q8TC71 538 aa17.12■□□□□ 0.33
SHQ1-201ENST00000325599 FBF1Q8TES7 1133 aa17.12■□□□□ 0.33
SHQ1-201ENST00000325599 MCRS1Q96EZ8 462 aa17.12■□□□□ 0.33
SHQ1-201ENST00000325599 HPDLQ96IR7 371 aa17.12■□□□□ 0.33
SHQ1-201ENST00000325599 MPHOSPH6Q99547 160 aaKnown RBP17.12■□□□□ 0.33
SHQ1-201ENST00000325599 KLF6Q99612 283 aaPredicted RBP17.12■□□□□ 0.33
SHQ1-201ENST00000325599 CXCL16Q9H2A7 254 aa17.12■□□□□ 0.33
SHQ1-201ENST00000325599 RXFP1Q9HBX9 757 aa17.12■□□□□ 0.33
SHQ1-201ENST00000325599 KLHL14Q9P2G3 628 aa17.12■□□□□ 0.33
SHQ1-201ENST00000325599 GOLGA8RI6L899 631 aa17.11■□□□□ 0.33
SHQ1-201ENST00000325599 RNF8O76064 485 aa17.11■□□□□ 0.33
SHQ1-201ENST00000325599 ARF4P18085 180 aaPredicted RBP17.11■□□□□ 0.33
SHQ1-201ENST00000325599 GEMIN4P57678 1058 aaKnown RBP17.11■□□□□ 0.33
SHQ1-201ENST00000325599 ILDR2Q71H61 639 aa17.11■□□□□ 0.33
SHQ1-201ENST00000325599 IGDCC3Q8IVU1 814 aa17.11■□□□□ 0.33
SHQ1-201ENST00000325599 PRMT7Q9NVM4 692 aaPredicted RBP17.11■□□□□ 0.33
SHQ1-201ENST00000325599 PSMC3IPQ9P2W1 217 aaPredicted RBP17.11■□□□□ 0.33
SHQ1-201ENST00000325599 XPO7Q9UIA9 1087 aaKnown RBP17.11■□□□□ 0.33
SHQ1-201ENST00000325599 PHTF1Q9UMS5 762 aa17.11■□□□□ 0.33
SHQ1-201ENST00000325599 G3BP2Q9UN86 482 aaKnown RBP17.11■□□□□ 0.33
SHQ1-201ENST00000325599 AKT3Q9Y243 479 aa17.11■□□□□ 0.33
SHQ1-201ENST00000325599 TYROBPO43914 113 aa17.11■□□□□ 0.33
SHQ1-201ENST00000325599 IREB2P48200 963 aaKnown RBP17.11■□□□□ 0.33
SHQ1-201ENST00000325599 NDST1P52848 882 aa17.11■□□□□ 0.33
SHQ1-201ENST00000325599 ARL4CP56559 192 aa17.11■□□□□ 0.33
SHQ1-201ENST00000325599 TTLL12Q14166 644 aaPredicted RBP17.11■□□□□ 0.33
SHQ1-201ENST00000325599 SPARCL1Q14515 664 aa17.11■□□□□ 0.33
SHQ1-201ENST00000325599 EFHC2Q5JST6 749 aa17.11■□□□□ 0.33
SHQ1-201ENST00000325599 PCGF5Q86SE9 256 aa17.11■□□□□ 0.33
SHQ1-201ENST00000325599 ERO1BQ86YB8 467 aa17.11■□□□□ 0.33
SHQ1-201ENST00000325599 TTC13Q8NBP0 860 aa17.11■□□□□ 0.33
SHQ1-201ENST00000325599 LRRN4Q8WUT4 740 aa17.11■□□□□ 0.33
SHQ1-201ENST00000325599 RSRC1Q96IZ7 334 aaKnown RBP17.11■□□□□ 0.33
SHQ1-201ENST00000325599 NOD2Q9HC29 1040 aa17.11■□□□□ 0.33
SHQ1-201ENST00000325599 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.11■□□□□ 0.33
SHQ1-201ENST00000325599 ERAP1Q9NZ08 941 aa17.11■□□□□ 0.33
SHQ1-201ENST00000325599 WDR35Q9P2L0 1181 aa17.11■□□□□ 0.33
SHQ1-201ENST00000325599 NQO1P15559 274 aaKnown RBP17.11■□□□□ 0.33
SHQ1-201ENST00000325599 CYP4V2Q6ZWL3 525 aaPredicted RBP17.11■□□□□ 0.33
SHQ1-201ENST00000325599 YIPF3Q9GZM5 350 aa17.11■□□□□ 0.33
SHQ1-201ENST00000325599 ZMYND8Q9ULU4 1186 aaPredicted RBP17.11■□□□□ 0.33
SHQ1-201ENST00000325599 E5RJQ4 531 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 APOC4-APOC2K7ER74 178 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 MAP3K6O95382 1288 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 APOC2P02655 101 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 ZNF286BP0CG31 522 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 PHKA2P46019 1235 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 RGS7P49802 495 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 SLC26A2P50443 739 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 CDH6P55285 790 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 MOGSQ13724 837 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 TTLL4Q14679 1199 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 RXFP2Q8WXD0 754 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 KLHL29Q96CT2 875 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 PAFAH2Q99487 392 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 SLC24A2Q9UI40 661 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 CHMP2BQ9UQN3 213 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 WDR91A4D1P6 747 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 A8MUI8 341 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 KRT16P08779 473 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 GABRB2P47870 512 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 ATP11AP98196 1134 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 DPYSL3Q14195 570 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 OR6B2Q6IFH4 312 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 LVRNQ6Q4G3 990 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 GPATCH2LQ9NWQ4 482 aa17.1■□□□□ 0.33
SHQ1-201ENST00000325599 SCN1AP35498 2009 aa17.09■□□□□ 0.33
SHQ1-201ENST00000325599 AVILO75366 819 aa17.09■□□□□ 0.33
SHQ1-201ENST00000325599 LGALS2P05162 132 aa17.09■□□□□ 0.33
SHQ1-201ENST00000325599 PDGFRAP16234 1089 aa17.09■□□□□ 0.33
SHQ1-201ENST00000325599 ARHGAP1Q07960 439 aa17.09■□□□□ 0.33
SHQ1-201ENST00000325599 RNF43Q68DV7 783 aa17.09■□□□□ 0.33
SHQ1-201ENST00000325599 C1orf228Q6PIY5 440 aa17.09■□□□□ 0.33
SHQ1-201ENST00000325599 FAM183BPQ6ZVS7 135 aa17.09■□□□□ 0.33
SHQ1-201ENST00000325599 PALM2Q8IXS6 379 aa17.09■□□□□ 0.33
SHQ1-201ENST00000325599 ATP11CQ8NB49 1132 aa17.09■□□□□ 0.33
SHQ1-201ENST00000325599 SMG5Q9UPR3 1016 aaKnown RBP17.09■□□□□ 0.33
SHQ1-201ENST00000325599 CITO14578 2027 aa17.09■□□□□ 0.33
SHQ1-201ENST00000325599 CFAP73A6NFT4 308 aa17.09■□□□□ 0.33
SHQ1-201ENST00000325599 MCF2LO15068 1137 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms