RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 IFT81Q8WYA0 676 aa13.71□□□□□ -0.22
CPNE1-201ENST00000317677 CCDC134Q9H6E4 229 aa13.71□□□□□ -0.22
CPNE1-201ENST00000317677 CYP3A43Q9HB55 503 aa13.71□□□□□ -0.22
CPNE1-201ENST00000317677 CDY2AQ9Y6F7 541 aa13.71□□□□□ -0.22
CPNE1-201ENST00000317677 TCRBV7S2A1N4TA0A589 114 aa13.7□□□□□ -0.22
CPNE1-201ENST00000317677 ESYT3A0FGR9 886 aa13.7□□□□□ -0.22
CPNE1-201ENST00000317677 SPOPO43791 374 aa13.7□□□□□ -0.22
CPNE1-201ENST00000317677 RARBP10826 455 aa13.7□□□□□ -0.22
CPNE1-201ENST00000317677 CD19P15391 556 aa13.7□□□□□ -0.22
CPNE1-201ENST00000317677 YWHAEP62258 255 aaKnown RBP13.7□□□□□ -0.22
CPNE1-201ENST00000317677 RPL7AP62424 266 aaKnown RBP13.7□□□□□ -0.22
CPNE1-201ENST00000317677 MRPS6P82932 125 aaKnown RBP13.7□□□□□ -0.22
CPNE1-201ENST00000317677 OGDHQ02218 1023 aa13.7□□□□□ -0.22
CPNE1-201ENST00000317677 PTPN11Q06124 597 aaPredicted RBP13.7□□□□□ -0.22
CPNE1-201ENST00000317677 SOX4Q06945 474 aaPredicted RBP13.7□□□□□ -0.22
CPNE1-201ENST00000317677 TAF11Q15544 211 aa13.7□□□□□ -0.22
CPNE1-201ENST00000317677 PTPN20Q4JDL3 420 aa13.7□□□□□ -0.22
CPNE1-201ENST00000317677 XKR4Q5GH76 650 aa13.7□□□□□ -0.22
CPNE1-201ENST00000317677 ANO7Q6IWH7 933 aa13.7□□□□□ -0.22
CPNE1-201ENST00000317677 ADAT2Q7Z6V5 191 aaKnown RBP13.7□□□□□ -0.22
CPNE1-201ENST00000317677 TRAPPC9Q96Q05 1148 aa13.7□□□□□ -0.22
CPNE1-201ENST00000317677 XPNPEP3Q9NQH7 507 aa13.7□□□□□ -0.22
CPNE1-201ENST00000317677 ARHGEF3Q9NR81 526 aa13.7□□□□□ -0.22
CPNE1-201ENST00000317677 IPPQ9Y573 584 aa13.7□□□□□ -0.22
CPNE1-201ENST00000317677 SART1O43290 800 aaKnown RBP13.69□□□□□ -0.22
CPNE1-201ENST00000317677 PROSCO94903 275 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 CHRNA1P02708 482 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 ASGR1P07306 291 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 CCL5P13501 91 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 NDST1P52848 882 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 TAS2R40P59535 323 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 TNNC1P63316 161 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 MGAT3Q09327 533 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 SETDB1Q15047 1291 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 SPDYCQ5MJ68 293 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 CYP4A22Q5TCH4 519 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 LIN9Q5TKA1 542 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 TAF2Q6P1X5 1199 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 SERINC5Q86VE9 423 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 TMEM35BQ8NCS4 154 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 MIPOL1Q8TD10 442 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 TLCD1Q96CP7 247 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 TMEM176AQ96HP8 235 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 MRPL45Q9BRJ2 306 aaKnown RBP13.69□□□□□ -0.22
CPNE1-201ENST00000317677 HERPUD2Q9BSE4 406 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 RNF208Q9H0X6 261 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 SMIM28A0A1B0GU29 152 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 MEIS3P2A8K0S8 358 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 CCDC188H7C350 402 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 MICAL2O94851 1124 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 PENKP01210 267 aaPredicted RBP13.69□□□□□ -0.22
CPNE1-201ENST00000317677 CTSHP09668 335 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 GNAZP19086 355 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 CDC25CP30307 473 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 NCALDP61601 193 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 SFSWAPQ12872 951 aaKnown RBP13.69□□□□□ -0.22
CPNE1-201ENST00000317677 SIX1Q15475 284 aaPredicted RBP13.69□□□□□ -0.22
CPNE1-201ENST00000317677 KCNA10Q16322 511 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 ODF2Q5BJF6 829 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 ARMC3Q5W041 872 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 C9orf57Q5W0N0 161 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 ERICH1Q86X53 443 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 UBL4BQ8N7F7 174 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 CFAP61Q8NHU2 1237 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 FEZF2Q8TBJ5 459 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 DDX27Q96GQ7 796 aaKnown RBP13.69□□□□□ -0.22
CPNE1-201ENST00000317677 TRIM4Q9C037 500 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 ZNF518BQ9C0D4 1074 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 LHX5Q9H2C1 402 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 GOLGA2P5Q9HBQ8 144 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.69□□□□□ -0.228e-7■□□□□ 11.1
CPNE1-201ENST00000317677 BARX2Q9UMQ3 279 aaPredicted RBP13.69□□□□□ -0.22
CPNE1-201ENST00000317677 TRPV2Q9Y5S1 764 aa13.69□□□□□ -0.22
CPNE1-201ENST00000317677 BRCA2P51587 3418 aa13.68□□□□□ -0.22
CPNE1-201ENST00000317677 TMEM191CA6NGB0 347 aa13.68□□□□□ -0.22
CPNE1-201ENST00000317677 SPTLC1O15269 473 aa13.68□□□□□ -0.22
CPNE1-201ENST00000317677 HCRTO43612 131 aa13.68□□□□□ -0.22
CPNE1-201ENST00000317677 INHAP05111 366 aa13.68□□□□□ -0.22
CPNE1-201ENST00000317677 RARAP10276 462 aa13.68□□□□□ -0.22
CPNE1-201ENST00000317677 TCF4P15884 667 aa13.68□□□□□ -0.22
CPNE1-201ENST00000317677 ATP6V1C1P21283 382 aa13.68□□□□□ -0.22
CPNE1-201ENST00000317677 CD151P48509 253 aa13.68□□□□□ -0.22
CPNE1-201ENST00000317677 YARSP54577 528 aaKnown RBP13.68□□□□□ -0.22
CPNE1-201ENST00000317677 ATP11AP98196 1134 aa13.68□□□□□ -0.22
CPNE1-201ENST00000317677 MTFR1Q15390 333 aa13.68□□□□□ -0.22
CPNE1-201ENST00000317677 UAP1Q16222 522 aaPredicted RBP13.68□□□□□ -0.22
CPNE1-201ENST00000317677 MAP3K21Q5TCX8 1036 aa13.68□□□□□ -0.22
CPNE1-201ENST00000317677 PRELID2Q8N945 189 aa13.68□□□□□ -0.22
CPNE1-201ENST00000317677 CPXM1Q96SM3 734 aa13.68□□□□□ -0.22
CPNE1-201ENST00000317677 SENP6Q9GZR1 1112 aaPredicted RBP13.68□□□□□ -0.22
CPNE1-201ENST00000317677 RAB17Q9H0T7 212 aa13.68□□□□□ -0.22
CPNE1-201ENST00000317677 AMACRQ9UHK6 382 aa13.68□□□□□ -0.22
CPNE1-201ENST00000317677 FRMPD3Q5JV73 1810 aa13.68□□□□□ -0.22
CPNE1-201ENST00000317677 PIRO00625 290 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 PTGESO14684 152 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 TNRC18O15417 2968 aaPredicted RBP13.67□□□□□ -0.22
CPNE1-201ENST00000317677 TLR3O15455 904 aaKnown RBP13.67□□□□□ -0.22
CPNE1-201ENST00000317677 CALB1P05937 261 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 KCNE1P15382 129 aa13.67□□□□□ -0.22
CPNE1-201ENST00000317677 IGFBP6P24592 240 aaPredicted RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms