RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 MAGEA9P43362 315 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 RPS9P46781 194 aaKnown RBP17.3■□□□□ 0.36
LSM1-201ENST00000311351 SLC5A3P53794 718 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 MORC3Q14149 939 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 ITPRIPL2Q3MIP1 535 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 NUP93Q8N1F7 819 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 CRYBG2Q8N1P7 616 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 CCDC150Q8NCX0 1101 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 FBXL13Q8NEE6 735 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 ZMIZ2Q8NF64 920 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 SCAMP5Q8TAC9 235 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 SH3RF2Q8TEC5 729 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 WHAMMQ8TF30 809 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 MSANTD3Q96H12 275 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 SMOQ99835 787 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 CYP3A43Q9HB55 503 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 RBM12Q9NTZ6 932 aaKnown RBP17.3■□□□□ 0.36
LSM1-201ENST00000311351 EHD2Q9NZN4 543 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 WNT6Q9Y6F9 365 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 R4GN57 208 aa17.3■□□□□ 0.36
LSM1-201ENST00000311351 OTOL1A6NHN0 477 aaPredicted RBP17.29■□□□□ 0.36
LSM1-201ENST00000311351 PPP1R3GB7ZBB8 358 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 PROB1E7EW31 1015 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 TNFRSF10BO14763 440 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 STX10O60499 249 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 GFRA3O60609 400 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 CILPO75339 1184 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 HDCP19113 662 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 MLLT6P55198 1093 aaPredicted RBP17.29■□□□□ 0.36
LSM1-201ENST00000311351 UBE2HP62256 183 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 ZXDBP98169 803 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 MTAPQ13126 283 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 PON2Q15165 354 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 TTI2Q6NXR4 508 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 CC2D1AQ6P1N0 951 aaPredicted RBP17.29■□□□□ 0.36
LSM1-201ENST00000311351 ASCL5Q7RTU5 278 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 RALGPS2Q86X27 583 aaPredicted RBP17.29■□□□□ 0.36
LSM1-201ENST00000311351 NELFBQ8WX92 580 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 FBXO32Q969P5 355 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 SLC35C1Q96A29 364 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 JAKMIP2Q96AA8 810 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 CHFRQ96EP1 664 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 DHTKD1Q96HY7 919 aaPredicted RBP17.29■□□□□ 0.36
LSM1-201ENST00000311351 SLITRK1Q96PX8 696 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 DUSP9Q99956 384 aaKnown RBP17.29■□□□□ 0.36
LSM1-201ENST00000311351 NT5C1AQ9BXI3 368 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 CHRDQ9H2X0 955 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 LMAN1LQ9HAT1 526 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 RAB20Q9NX57 234 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 ARMCX3Q9UH62 379 aaPredicted RBP17.29■□□□□ 0.36
LSM1-201ENST00000311351 ARHGAP26Q9UNA1 814 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 FAM186AA6NE01 2351 aa17.29■□□□□ 0.36
LSM1-201ENST00000311351 RTN3O95197 1032 aaPredicted RBP17.28■□□□□ 0.36
LSM1-201ENST00000311351 OAS1P00973 400 aaKnown RBP17.28■□□□□ 0.36
LSM1-201ENST00000311351 CHRNB1P11230 501 aa17.28■□□□□ 0.36
LSM1-201ENST00000311351 YWHAQP27348 245 aa17.28■□□□□ 0.36
LSM1-201ENST00000311351 ANP32AP39687 249 aaKnown RBP17.28■□□□□ 0.36
LSM1-201ENST00000311351 MAP3K7CLP57077 242 aa17.28■□□□□ 0.36
LSM1-201ENST00000311351 RUNX3Q13761 415 aa17.28■□□□□ 0.36
LSM1-201ENST00000311351 ZNF394Q53GI3 561 aa17.28■□□□□ 0.36
LSM1-201ENST00000311351 TSSK4Q6SA08 328 aa17.28■□□□□ 0.36
LSM1-201ENST00000311351 Q6ZS52 159 aa17.28■□□□□ 0.36
LSM1-201ENST00000311351 GPRIN1Q7Z2K8 1008 aa17.28■□□□□ 0.36
LSM1-201ENST00000311351 TATDN2Q93075 761 aa17.28■□□□□ 0.36
LSM1-201ENST00000311351 RNF38Q9H0F5 515 aa17.28■□□□□ 0.36
LSM1-201ENST00000311351 SMPD4Q9NXE4 827 aa17.28■□□□□ 0.36
LSM1-201ENST00000311351 ATG2BQ96BY7 2078 aa17.27■□□□□ 0.36
LSM1-201ENST00000311351 PRR23AA6NEV1 266 aa17.27■□□□□ 0.36
LSM1-201ENST00000311351 SCAMP3O14828 347 aaKnown RBP17.27■□□□□ 0.36
LSM1-201ENST00000311351 OLFM2O95897 454 aa17.27■□□□□ 0.36
LSM1-201ENST00000311351 FAM200BP0CF97 657 aa17.27■□□□□ 0.36
LSM1-201ENST00000311351 PPP1R2P41236 205 aa17.27■□□□□ 0.36
LSM1-201ENST00000311351 IFNAR2P48551 515 aa17.27■□□□□ 0.36
LSM1-201ENST00000311351 PDE6CP51160 858 aa17.27■□□□□ 0.36
LSM1-201ENST00000311351 STX17P56962 302 aa17.27■□□□□ 0.36
LSM1-201ENST00000311351 CSTF1Q05048 431 aaKnown RBP17.27■□□□□ 0.36
LSM1-201ENST00000311351 GAS6Q14393 721 aa17.27■□□□□ 0.36
LSM1-201ENST00000311351 PDGFRLQ15198 375 aa17.27■□□□□ 0.36
LSM1-201ENST00000311351 CAMK4Q16566 473 aa17.27■□□□□ 0.36
LSM1-201ENST00000311351 NAIF1Q69YI7 327 aaPredicted RBP17.27■□□□□ 0.36
LSM1-201ENST00000311351 C1orf228Q6PIY5 440 aa17.27■□□□□ 0.36
LSM1-201ENST00000311351 CLEC20AQ6ZU45 233 aa17.27■□□□□ 0.36
LSM1-201ENST00000311351 HNRNPABQ99729 332 aaKnown RBP17.27■□□□□ 0.36
LSM1-201ENST00000311351 CSNK1G1Q9HCP0 422 aa17.27■□□□□ 0.36
LSM1-201ENST00000311351 PRMT8Q9NR22 394 aaPredicted RBP17.27■□□□□ 0.36
LSM1-201ENST00000311351 CISHQ9NSE2 258 aa17.27■□□□□ 0.36
LSM1-201ENST00000311351 DUS2Q9NX74 493 aaKnown RBP17.27■□□□□ 0.36
LSM1-201ENST00000311351 GMIPQ9P107 970 aa17.27■□□□□ 0.36
LSM1-201ENST00000311351 CPQQ9Y646 472 aa17.27■□□□□ 0.36
LSM1-201ENST00000311351 GVINP1Q7Z2Y8 2422 aa17.26■□□□□ 0.35
LSM1-201ENST00000311351 LEFTY2O00292 366 aa17.26■□□□□ 0.35
LSM1-201ENST00000311351 TCF3P15923 654 aa17.26■□□□□ 0.35
LSM1-201ENST00000311351 PFKLP17858 780 aa17.26■□□□□ 0.35
LSM1-201ENST00000311351 TRIM21P19474 475 aaKnown RBP17.26■□□□□ 0.35
LSM1-201ENST00000311351 PPP3CCP48454 512 aa17.26■□□□□ 0.35
LSM1-201ENST00000311351 CCDC40Q4G0X9 1142 aa17.26■□□□□ 0.35
LSM1-201ENST00000311351 PDZD8Q8NEN9 1154 aa17.26■□□□□ 0.35
LSM1-201ENST00000311351 OSCP1Q8WVF1 389 aa17.26■□□□□ 0.35
LSM1-201ENST00000311351 NKD2Q969F2 451 aaPredicted RBP17.26■□□□□ 0.35
LSM1-201ENST00000311351 CYFIP2Q96F07 1278 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms