RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 CYP2U1Q7Z449 544 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 YAF2Q8IY57 180 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 CCDC36Q8IYA8 594 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 TCEANC2Q96MN5 208 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 REXO4Q9GZR2 422 aaKnown RBP5.43□□□□□ -1.54
SCN1A-201ENST00000303395 PTTG3PQ9NZH4 202 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 UBP1Q9NZI7 540 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 CNOT8Q9UFF9 292 aaKnown RBP5.43□□□□□ -1.54
SCN1A-201ENST00000303395 PCDHGA4Q9Y5G9 962 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 PCDHA1Q9Y5I3 950 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 NR2E3Q9Y5X4 410 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 MRC1P22897 1456 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 PPP1R3GB7ZBB8 358 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 ATP9BO43861 1147 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 MYCLP12524 364 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-201ENST00000303395 PTPN1P18031 435 aaKnown RBP5.43□□□□□ -1.54
SCN1A-201ENST00000303395 PTPN7P35236 360 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 EIF2S3P41091 472 aaKnown RBP5.43□□□□□ -1.54
SCN1A-201ENST00000303395 ZAP70P43403 619 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 ROR1Q01973 937 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 FCHO2Q0JRZ9 810 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 MMRN1Q13201 1228 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 TMEM44Q2T9K0 475 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 ZNF544Q6NX49 715 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 BNC2Q6ZN30 1099 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-201ENST00000303395 AMER2Q8N7J2 671 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 KYQ8NBH2 561 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 ASAP3Q8TDY4 903 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 PTCD2Q8WV60 388 aaKnown RBP5.43□□□□□ -1.54
SCN1A-201ENST00000303395 E2F7Q96AV8 911 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 ZNF560Q96MR9 790 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 CLIC6Q96NY7 704 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 TRIM31Q9BZY9 425 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 NOL6Q9H6R4 1146 aaKnown RBP5.43□□□□□ -1.54
SCN1A-201ENST00000303395 ZWILCHQ9H900 591 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 PIDD1Q9HB75 910 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 TMEM161AQ9NX61 479 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 SERPINB13Q9UIV8 391 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 ZNF180Q9UJW8 692 aa5.43□□□□□ -1.54
SCN1A-201ENST00000303395 TCP11X1B4DZS4 312 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 SRP72O76094 671 aaKnown RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 MOCS3O95396 460 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 GNAT1P11488 350 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 PPP4CP60510 307 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 BTN2A1Q7KYR7 527 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 RTKN2Q8IZC4 609 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 CEP70Q8NHQ1 597 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 TSPEARQ8WU66 669 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 ARL8AQ96BM9 186 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 TUBA1CQ9BQE3 449 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 ILKAPQ9H0C8 392 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 SAYSD1Q9NPB0 183 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 RAD18Q9NS91 495 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 DDX43Q9NXZ2 648 aaKnown RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 PKD2L1Q9P0L9 805 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 AKAP7Q9P0M2 348 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 SLC12A4Q9UP95 1085 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 KNTC1P50748 2209 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 RNF103-CHMP3A0A140T963 221 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 GSAPA4D1B5 854 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 SGK1O00141 431 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 PGM3O95394 542 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 GJB6O95452 261 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 PRELPP51888 382 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 ELF3P78545 371 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 ST3GAL1Q11201 340 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 RALGDSQ12967 914 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 NAPEPLDQ6IQ20 393 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 RAD9BQ6WBX8 426 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 ZNF554Q86TJ5 538 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 CDR2LQ86X02 465 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 KATNAL2Q8IYT4 538 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 GJD3Q8N144 294 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 SFRP1Q8N474 314 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 AP3S1Q92572 193 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 LPAR1Q92633 364 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 ZNF75CPQ92670 426 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 LRRC1Q9BTT6 524 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 HTATIP2Q9BUP3 242 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 LRRC2Q9BYS8 371 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 DBR1Q9UK59 544 aaKnown RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 TSC22D4Q9Y3Q8 395 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 SPEF1Q9Y4P9 236 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 IRS2Q9Y4H2 1338 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 C5orf58C9J3I9 102 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 M0QX08 132 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 KHDRBS3O75525 346 aaKnown RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 S100A9P06702 114 aaKnown RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 ANXA6P08133 673 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 ERCC2P18074 760 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 ATP4AP20648 1035 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 COILP38432 576 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 RPL3P39023 403 aaKnown RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 FMO5P49326 533 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 ARPC4P59998 168 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 CYP4A11Q02928 519 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 ZNF844Q08AG5 666 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 KLHL12Q53G59 568 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 USP39Q53GS9 565 aaKnown RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 CYP4A22Q5TCH4 519 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 158.3 ms