RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 NRDE2Q9H7Z3 1164 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 PLEKHA5Q9HAU0 1116 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 GTSE1Q9NYZ3 720 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 PRKAG3Q9UGI9 489 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 ATP6V1HQ9UI12 483 aa6.65□□□□□ -1.34
VPS35-201ENST00000299138 ATP9BO43861 1147 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 CHEK2O96017 543 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 P4HBP07237 508 aaKnown RBP6.65□□□□□ -1.35
VPS35-201ENST00000299138 IL10P22301 178 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 PTGIRP43119 386 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 DYNLL1P63167 89 aaKnown RBP6.65□□□□□ -1.35
VPS35-201ENST00000299138 NSUN2Q08J23 767 aaKnown RBP eCLIP6.65□□□□□ -1.35
VPS35-201ENST00000299138 MESDQ14696 234 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 MAPRE2Q15555 327 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 KBTBD12Q3ZCT8 623 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 EGFL6Q8IUX8 553 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 CDAN1Q8IWY9 1227 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 CCDC33Q8N5R6 958 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 DRAXINQ8NBI3 349 aaPredicted RBP6.65□□□□□ -1.35
VPS35-201ENST00000299138 TMEM35BQ8NCS4 154 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 FAM81AQ8TBF8 368 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 MS4A14Q96JA4 679 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 TRIM51Q9BSJ1 452 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 VPS33BQ9H267 617 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 ACSS3Q9H6R3 686 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 SPATA31A6Q5VVP1 1343 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 LRRIQ4A6NIV6 560 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 SLCO1B7G3V0H7 640 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 TRDMT1O14717 391 aaKnown RBP6.65□□□□□ -1.35
VPS35-201ENST00000299138 PLA2G6O60733 806 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 RPS6KA4O75676 772 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 APOA4P06727 396 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 VAMP7P51809 220 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 PIGHQ14442 188 aaPredicted RBP6.65□□□□□ -1.35
VPS35-201ENST00000299138 MAPK6Q16659 721 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 SLC5A9Q2M3M2 681 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 EFHC2Q5JST6 749 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 SLFN13Q68D06 897 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 PPIL6Q8IXY8 311 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 RASGRP4Q8TDF6 673 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 PPP1R14AQ96A00 147 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 POTEMA6NI47 508 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 TBKBP1A7MCY6 615 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 PP2D1A8MPX8 630 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 RNF103O00237 685 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 AKAP10O43572 662 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 SCGNO76038 276 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 COMTP21964 271 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 ITGA3P26006 1051 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 PGM1P36871 562 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 PLOD1Q02809 727 aaPredicted RBP6.65□□□□□ -1.35
VPS35-201ENST00000299138 RALGDSQ12967 914 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 ACAD10Q6JQN1 1059 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 KYAT3Q6YP21 454 aaKnown RBP6.65□□□□□ -1.35
VPS35-201ENST00000299138 IFNEQ86WN2 208 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 FAM71AQ8IYT1 594 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 C19orf18Q8NEA5 215 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 SEMA4AQ9H3S1 761 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 CAAP1Q9H8G2 361 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 TMEM161AQ9NX61 479 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 PTTG2Q9NZH5 202 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 STON1Q9Y6Q2 735 aa6.65□□□□□ -1.35
VPS35-201ENST00000299138 UMODL1Q5DID0 1318 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 C16orf96A6NNT2 1141 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 EML1O00423 815 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 ERBB2P04626 1255 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 PAMP19021 973 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 RPL5P46777 297 aaKnown RBP6.64□□□□□ -1.35
VPS35-201ENST00000299138 NLRP11P59045 1033 aaKnown RBP6.64□□□□□ -1.35
VPS35-201ENST00000299138 DYNLT1P63172 113 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 THOC5Q13769 683 aaKnown RBP6.64□□□□□ -1.35
VPS35-201ENST00000299138 RNF19BQ6ZMZ0 732 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 THNSL1Q8IYQ7 743 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 KCNN1Q92952 543 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 MLPHQ9BV36 600 aaPredicted RBP6.64□□□□□ -1.35
VPS35-201ENST00000299138 DCLK3Q9C098 648 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 TAGLN3Q9UI15 199 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 TRIM33Q9UPN9 1127 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 CDK16Q00536 496 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 COX10Q12887 443 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 PWP1Q13610 501 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 FAM47CQ5HY64 1035 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 MARK2Q7KZI7 788 aaKnown RBP6.64□□□□□ -1.35
VPS35-201ENST00000299138 RRM2BQ7LG56 351 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 DNAAF3Q8N9W5 541 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 ITPKCQ96DU7 683 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 MED10Q9BTT4 135 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 NUP85Q9BW27 656 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 HDHD2Q9H0R4 259 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 QTRT2Q9H974 415 aaKnown RBP6.64□□□□□ -1.35
VPS35-201ENST00000299138 AGPAT3Q9NRZ7 376 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 SPDYE5A6NIY4 337 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 MYO1GB0I1T2 1018 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 TSPAN4O14817 238 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 EPHB6O15197 1021 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 MED7O43513 233 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 CYTH3O43739 400 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 PAX7P23759 505 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 DNAJB1P25685 340 aa6.64□□□□□ -1.35
VPS35-201ENST00000299138 CLK2P49760 499 aaKnown RBP6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms